Difference between revisions of "Publications"
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| − | A list of | + | A list of recent books and journal papers by lab members. [[Conference and other publications]] are listed on a separate page. |
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| + | Links to papers are either {{Open|https://en.wikipedia.org/wiki/Open_access|open access}} or {{Closed|https://dictionary.cambridge.org/dictionary/english/subscription|require subscription}}. A single asterisk (*) indicates that the version is not authoritative (e.g., preprint version). | ||
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| + | Publications with {{HighlyCited}} have been cited at least 50 times (counts from Google Scholar). | ||
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| + | Some publications have <span style="background:#CFEFFF">''links''</span> to media coverage and other supplemental information. | ||
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| + | ''In compliance with the [http://www.science.gc.ca/eic/site/063.nsf/eng/h_F6765465.html?OpenDocument Tri-Agency Open Access Policy], all journal publications since May 1, 2015 either have an open-access version, or were not supported by tri-agency funds (designated by **).'' | ||
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| + | ''For publications prior to 2011, see: [[Older Publications]]'' | ||
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| + | == Books == | ||
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| + | * T. Nakano, A. W. Eckford, and T. Haraguchi, ''Molecular Communication'', Cambridge: Cambridge University Press, 2013. <br />{{Open|1=https://books.google.ca/books?id=uVhsAAAAQBAJ&printsec=frontcover#v=onepage&q&f=false|2=Google Books|3=''(partial preview)''}} {{HighlyCited}} | ||
== Journal Papers == | == Journal Papers == | ||
| − | === | + | === Preprints === |
| − | * | + | * D. Jing, L. Lin, and A. W. Eckford, "Performance analysis and ISI mitigation with imperfect transmitter in molecular communication," to appear in ''IEEE Transactions on Nanobioscience''.<br />{{Open|https://arxiv.org/abs/2404.02383|arXiv|*}} {{Closed|https://ieeexplore.ieee.org/abstract/document/10466618|IEEEXplore early access}} |
| − | + | * F. Gulec, D. Y. Koda, B. Atakan, and A. W. Eckford, "Localization of a passive source with a sensor network based experimental molecular communication platform," to appear in ''IEEE Transactions on Molecular, Biological, and Multi-Scale Communications''.<br />{{Open|https://arxiv.org/abs/2311.16848|arXiv|*}} {{Closed|https://ieeexplore.ieee.org/abstract/document/10470431|IEEEXplore early access}} | |
| − | * | + | * D. Jing, L. Lin, and A. W. Eckford, "Energy allocation for multi-user cooperative molecular communication systems in the internet of bio-nano things," to appear in ''IEEE Internet of Things Journal''.<br />{{Open|https://arxiv.org/abs/2404.02286|arXiv|*}} {{Closed|https://ieeexplore.ieee.org/abstract/document/10398486|IEEEXplore early access}} |
| − | * | + | * Y. Qiu, Y. M. Kang, C. Korfmann, F. Pouyet, A. W. Eckford, and A. F. Palazzo, "The GC-content at the 5’ends of human protein-coding genes is undergoing mutational decay," ''BioRxiv'' 2024.03.12.584636, 2024.<br />{{Open|https://www.biorxiv.org/content/10.1101/2024.03.12.584636v1.abstract|bioRxiv|*}} |
| − | * | ||
| − | === | + | === 2024 === |
| − | * | + | * Y. Parhizkar, G. Cheung, and A. W. Eckford, "Signal processing in the retina: Interpretable graph classifier to predict ganglion cell responses," ''IEEE Open Journal of Signal Processing,'' vol. 5, pp. 303-311, 2024.<br /> {{Open|https://ieeexplore.ieee.org/document/10379097|IEEEXplore open access}} |
| − | === | + | === 2023 === |
| − | * | + | * H. Elayan, A. W. Eckford, and R. S. Adve, "Terahertz induced protein interactions in a random medium," ''IEEE Transactions on Molecular, Biological, and Multi-Scale Communications,'' vol. 9, no. 4, pp. 435-446, Dec. 2023.<br />{{Open|https://arxiv.org/abs/2310.14519|arXiv|*}} {{Closed|https://ieeexplore.ieee.org/document/10294246|IEEEXplore}} |
| − | * | + | * T. Sajjad and A. W. Eckford, "High-speed molecular communication in vacuum," ''IEEE Transactions on Molecular, Biological, and Multi-Scale Communications,'' vol. 9, no. 4, pp. 382-390, Dec. 2023.<br />{{Open|https://arxiv.org/abs/2307.11804|arXiv|*}} {{Closed|https://ieeexplore.ieee.org/document/10198389|IEEEXplore}} |
| − | * S. | + | * F. Gulec and A. W. Eckford, "A stochastic biofilm disruption model based on quorum sensing mimickers," ''IEEE Transactions on Molecular, Biological, and Multi-Scale Communications,'' vol. 9, no. 3, pp. 346-350, Sep. 2023.<br />{{Open|https://arxiv.org/abs/2301.13015|arXiv|*}} {{Closed|https://ieeexplore.ieee.org/document/10173543|IEEEXplore}} |
| + | * X. Chen, F. Ji, M. Wen, Y. Huang, and A. W. Eckford, "Mutual information rate of Gaussian and truncated Gaussian inputs on intensity-driven signal transduction channels," ''IEEE Communications Letters,'' vol. 27, no. 8, pp. 1989-1993, Aug. 2023.<br />{{Open|https://arxiv.org/abs/2306.15421|arXiv|*}} {{Closed|https://ieeexplore.ieee.org/document/10163393|IEEEXplore}} | ||
| + | * D. Jing and A. W. Eckford, "Lightweight channel codes for ISI mitigation in molecular communication between bionanosensors," ''IEEE Sensors Journal,'' vol. 23, no. 13, pp. 13859-13867, Jul. 2023.<br />{{Open|https://arxiv.org/abs/2305.14001|arXiv|*}} {{Closed|https://ieeexplore.ieee.org/document/10134568|IEEEXplore}} | ||
| + | * F. Gulec, F. Dressler, and A. W. Eckford, "A computational approach for the characterization of airborne pathogen transmission in turbulent molecular communication channels," ''IEEE Transactions on Molecular, Biological, and Multi-Scale Communications,'' vol. 9, no. 2, pp.124-134, Jun. 2023.<br />{{Open|https://arxiv.org/abs/2305.01412|arXiv|*}} {{Closed|https://ieeexplore.ieee.org/document/10115295|IEEEXplore}} | ||
| + | * W. D. Hunt, N. A. McCarty, E. M. Marin, R. S. Westafer, P. R. Yamin, G. Cui, A. W. Eckford, and D. R. Denison, "A transistor model for the cystic fibrosis transmembrane conductance regulator," ''Biophysical Reports'', vol. 3, no. 2, 100108, Jun. 2023.<br />{{Open|https://www.sciencedirect.com/science/article/pii/S2667074723000095|ScienceDirect open access|}} | ||
| + | * H. Elayan, A. W. Eckford, and R. S. Adve, "Selectivity of protein interactions stimulated by terahertz signals," ''IEEE Transactions on Nanobioscience,'' vol. 22, no. 2, pp. 318-328, Apr. 2023.<br /> {{Open|https://arxiv.org/abs/2207.01572|arXiv|*}} {{Closed|https://ieeexplore.ieee.org/document/9819908|IEEEXplore}} | ||
| + | * Y. Fang, S. T. Johnston, M. Faria, X. Huang, A. W. Eckford, and J. Evans, “Molecular communication for quorum sensing inspired cooperative drug delivery,” ''IEEE Transactions on Molecular, Biological, and Multi-Scale Communications,'' vol. 9, no. 1, pp. 100-105, Mar. 2023.<br /> {{Open|https://arxiv.org/abs/2303.08015|arXiv|*}} {{Closed|https://ieeexplore.ieee.org/abstract/document/10035488|IEEEXplore}} | ||
| − | === | + | === 2022 === |
| − | * | + | * D. Chen, A. G. Strang, A. W. Eckford, and P. J. Thomas, "Explicitly solvable continuous-time inference for partially observed Markov processes," ''IEEE Transactions on Signal Processing,'' vol. 70, pp. 6232-6242, 2022.<br /> {{Open|https://arxiv.org/abs/2301.00843|arXiv|*}} {{Closed|https://ieeexplore.ieee.org/document/10007059|IEEEXplore}} |
| − | * | + | * A. S. Moffett, G. Cui, P. J. Thomas, W. D. Hunt, N. A. McCarty, R. S. Westafer, and A. W. Eckford, "Permissive and nonpermissive channel closings in CFTR revealed by a factor graph inference algorithm," ''Biophysical Reports'', vol. 2, no. 4, 100083, Dec. 2022.<br />{{Open|https://www.sciencedirect.com/science/article/pii/S2667074722000404|ScienceDirect open access}} |
| − | * | + | * X. Chen, M. Wen, F. Ji, Y. Huang, Y. Tang, and A. W. Eckford, “Detection interval of aerosol propagation from the perspective of molecular communication: How long is enough?” ''IEEE Journal on Selected Areas in Communications,'' vol. 40, no. 22, pp. 3255-3270, Nov. 2022.<br /> {{Open|https://arxiv.org/abs/2204.08636|arXiv|*}} {{Closed|https://ieeexplore.ieee.org/document/9913432|IEEEXplore}} |
| + | * X. Chen, F. Ji, M. Wen, Y. Huang, Y. Tang, and A. W. Eckford, "Low complexity first: Duration-centric ISI mitigation in molecular communication via diffusion," ''IEEE Communications Letters,'' vol. 26, no. 11, pp. 2665-2669, Nov. 2022.<br />{{Open|https://arxiv.org/abs/2207.09565|arXiv|*}} {{Closed|https://ieeexplore.ieee.org/document/9840365|IEEEXplore}} | ||
| + | * A. S. Moffett, P. J. Thomas, M. Hinczewski, and A. W. Eckford, "Cheater suppression and stochastic clearance through quorum sensing," ''PLOS Computational Biology,'' vol. 18, no. 7, e1010292, Jul. 2022.<br />{{Open|1=https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1010292|2=PLOS Computational Biology|3=}} {{Media|https://phys.org/news/2022-07-reveals-spiteful-behaviour-bacteria.html|Phys.org}} {{Media|https://www.iflscience.com/bacteria-can-behave-spitefully-to-those-that-dont-support-the-colony-64775|IFLScience}} {{Media|https://www.sciencealert.com/even-bacteria-hate-freeloaders|ScienceAlert}} | ||
| + | * D. Jing, Y. Li, and A. W. Eckford, "An extended Kalman filter for distance estimation and power control in mobile molecular communication," ''IEEE Transactions on Communications,'' vol. 70, no. 7, pp. 4373-4385, Jul. 2022.<br />{{Open|https://arxiv.org/abs/2205.09596|arXiv|*}} {{Closed|https://ieeexplore.ieee.org/document/9780147|IEEEXplore|}} | ||
| + | * A. S. Moffett and A. W. Eckford, "Minimal informational requirements for fitness," ''Physical Review E,'' vol. 105, no. 1, 014403, Jan. 2022. <br /> {{Open|http://arxiv.org/abs/2112.02193|arXiv|*}} {{Closed|https://journals.aps.org/pre/abstract/10.1103/PhysRevE.105.014403|Physical Review Journals|}} | ||
| − | === | + | === 2021 === |
| − | * | + | * X. Qian, M. Di Renzo, and A. W. Eckford, "K-Means Clustering-Aided Non-Coherent Detection for Molecular Communications," ''IEEE Transactions on Communications,'' vol. 69, no. 8, pp. 5456-5470, Aug. 2021.<br />{{Open|https://arxiv.org/abs/2104.08929|arXiv|*}} {{Closed|https://ieeexplore.ieee.org/document/9415646|IEEEXplore|}} |
| − | * W. | + | * H. Awan, R. S. Adve, N. Wallbridge, C. Plummer, and A. W. Eckford, "Modelling the Role of Inter-cellular Communication in Modulating Photosynthesis in Plants," ''IEEE Transactions on Molecular, Biological, and Multi-Scale Communication,'' vol. 7, no. 2, pp. 94-99, Jun. 2021.<br />{{Open|https://arxiv.org/abs/2103.15773|arXiv|*}} {{Closed|https://ieeexplore.ieee.org/document/9399099|IEEEXplore|}} |
| + | * Y. Fang, A. Noel. A. W. Eckford, N. Yang, and J. Guo, "Characterization of cooperators in quorum sensing with 2D molecular signal analysis," ''IEEE Transactions on Communications,'' vol. 69, no. 2, pp. 799-816, Feb. 2021.<br />{{Open|https://arxiv.org/abs/2006.04706|arXiv|*}} {{Closed|https://ieeexplore.ieee.org/document/9252184|IEEEXplore|}} | ||
| + | * D. Jing, Y. Li, and A. W. Eckford, "Power control for ISI mitigation in mobile molecular communication," ''IEEE Communications Letters,'' vol. 25, no. 2, pp. 460-464, Feb. 2021.<br /> {{Open|https://arxiv.org/abs/2008.12368|arXiv|*}} {{Closed|https://ieeexplore.ieee.org/document/9184099|IEEEXplore|}} | ||
| + | * H. Elayan, A. W. Eckford, and R. Adve, "Information rates of controlled protein interactions using terahertz communication," ''IEEE Transactions on Nanobioscience'', vol. 20, no. 1, pp. 9-19, Jan. 2021.<br /> {{Open|https://arxiv.org/abs/2009.01060|arXiv|*}} {{Closed|https://ieeexplore.ieee.org/document/9186627|IEEEXplore|}} | ||
| − | === | + | === 2020 === |
| − | * N. | + | * A. S. Moffett, N. Wallbridge, C. Plummer, and A. W. Eckford, "The fitness value of information with delayed phenotype switching: Optimal performance with imperfect sensing," ''Physical Review E,'' vol. 102, no. 5, 052403, Nov. 2020.<br />{{Open|https://arxiv.org/abs/2009.00058|arXiv|*}} {{Closed|https://journals.aps.org/pre/abstract/10.1103/PhysRevE.102.052403|Physical Review Journals|}} |
| − | + | * H. Awan, K. Zeid, R. S. Adve, N. Wallbridge, C. Plummer, and A. W. Eckford, "Communication in plants: Comparison of multiple action potential and mechanosensitive signals with experiments," ''IEEE Transactions on Nanobioscience,'' vol. 19, no. 2, pp. 213-223, Apr. 2020.<br /> {{Open|https://arxiv.org/abs/1911.04895|arXiv|*}} {{Closed|https://ieeexplore.ieee.org/document/8890624|IEEEXplore|}} {{Media|https://www.embs.org/tnb/articles/communication-in-plants-comparison-of-multiple-action-potential-and-mechanosensitive-signals-with-experiments/|TNB Featured Article}} | |
| − | + | * P. Hou, A. W. Eckford and L. Zhao, "Analysis and design of two-hop diffusion-based molecular communication with ligand receptors," ''IEEE Access'', vol. 8, pp. 189458-189470, 2020.<br />{{Open|https://ieeexplore.ieee.org/document/9233383|IEEEXplore open access|}} | |
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| − | === | + | === 2019 === |
| − | * N. | + | * A. Noel, S. Monabbati, D. Makrakis, and A. W. Eckford, "Modeling interference-free neuron spikes with optogenetic stimulation," ''IEEE Transactions on Molecular, Biological, and Multi-Scale Communications,'' vol. 5, no. 2, pp. 100-111, Nov. 2019.<br /> {{Open|https://arxiv.org/abs/1905.05678|arXiv|*}} {{Closed|https://ieeexplore.ieee.org/document/9040660|IEEEXplore|}} |
| + | * Y. Fang, A. Noel, N. Yang, A. W. Eckford, and R. A. Kennedy, "Symbol-by-symbol maximum likelihood detection for cooperative molecular communication," ''IEEE Transactions on Communications,'' vol. 67, no. 7, pp. 4885-4899, Jul. 2019.<br /> {{Open|https://arxiv.org/abs/1801.02890|arXiv|*}} {{Closed|https://ieeexplore.ieee.org/document/8685182|IEEEXplore|}} | ||
| + | * M. Mohseni, S. A. Banani, A. W. Eckford, and R. S. Adve, "Scheduling for VoLTE: Resource allocation optimization and low-complexity algorithms," ''IEEE Transactions on Wireless Communications'', vol. 18, no. 3, pp. 1534-1547, Mar. 2019.<br /> {{Open|https://arxiv.org/abs/1901.02111|arXiv|*}} {{Closed|https://ieeexplore.ieee.org/document/8617701|IEEEXplore|}} | ||
| + | * H. Awan, R. S. Adve, N. Wallbridge, C. Plummer, and A. W. Eckford, "Communication and information theory of single action potential signals in plants," ''IEEE Transactions on Nanobioscience'', vol. 18, no. 1, pp. 61-73, Jan. 2019. <br /> {{Open|https://arxiv.org/abs/1811.03612|arXiv|*}} {{Closed|https://ieeexplore.ieee.org/document/8533407|IEEEXplore|}} | ||
| + | * H. Awan, R. S. Adve, N. Wallbridge, C. Plummer and A. W. Eckford, "Information Theoretic Based Comparative Analysis of Different Communication Signals in Plants," ''IEEE Access'', vol. 7, pp. 117075-117087, 2019.<br /> {{Open|https://ieeexplore.ieee.org/document/8792048|IEEEXplore open access|}} | ||
| + | * N. Kim, N. Farsad, C. Lee, A. W. Eckford and C. Chae, "An experimentally validated channel model for molecular communication systems," ''IEEE Access'', vol. 7, pp. 81849-81858, 2019.<br />{{Open|https://ieeexplore.ieee.org/document/8746073|IEEEXplore open access|}} | ||
| + | * X. Qian, M. Di Renzo and A. W. Eckford, "Molecular Communications: Model-Based and Data-Driven Receiver Design and Optimization," ''IEEE Access'', vol. 7, pp. 53555-53565, 2019.<br /> {{Open|https://ieeexplore.ieee.org/document/8695004|IEEEXplore open access|}} | ||
| − | === | + | === 2018 === |
| − | * A. | + | * A. Noel, D. Makrakis, and A. W. Eckford, "Distortion distribution of neural spike train sequence matching with optogenetics," ''IEEE Transactions on Biomedical Engineering,'' vol. 65, no. 12, pp. 2814-2826, Dec. 2018. <br />{{Open|https://arxiv.org/abs/1708.06641|arXiv|*}} {{Closed|https://ieeexplore.ieee.org/document/8325330|IEEEXplore|}} {{Media|https://web.archive.org/web/20190101043934/https://tbme.embs.org/|TBME featured article}} |
| − | + | * T. Furubayashi, Y. Sakatani, T. Nakano, A. W. Eckford, and N. Ichihashi, "Design and wet-laboratory implementation of reliable end-to-end molecular communication," ''Wireless Networks'', vol. 24, no. 5, pp. 1809-1819, Jul. 2018.** <br />{{Closed|http://link.springer.com/article/10.1007/s11276-016-1435-4|SpringerLink}} | |
| − | + | * N. Farsad, Y. Murin, A. W. Eckford, and A. Goldsmith, "Capacity limits of diffusion-based molecular timing channels with finite particle lifetime," ''IEEE Transactions on Molecular, Biological, and Multi-Scale Communications'', vol. 4, no. 2, Jun. 2018.<br /> {{Open|https://arxiv.org/abs/1602.07757|arXiv|*}} {{Closed|https://ieeexplore.ieee.org/document/8653985|IEEEXplore|}} | |
| − | * | + | * A. W. Eckford and P. J. Thomas, "The channel capacity of channelrhodopsin and other intensity-driven signal transduction receptors," ''IEEE Transactions on Molecular, Biological, and Multi-Scale Communications'', vol. 4, no. 1, Mar. 2018.<br /> {{Open|https://arxiv.org/abs/1804.04533|arXiv|*}} {{Closed|https://ieeexplore.ieee.org/document/8627967|IEEEXplore|}} |
| − | * | + | * W. Guo, Y. Deng, H. B. Yilmaz, N. Farsad, M. Elkashlan, C.-B. Chae, A. W. Eckford, and A. Nallanathan, "SMIET: Simultaneous molecular information and energy transfer," ''IEEE Wireless Communications,'' vol. 25, no. 1, pp. 106-113, Feb. 2018. <br />{{Open|https://arxiv.org/abs/1605.09474|arXiv|*}} {{Closed|http://ieeexplore.ieee.org/abstract/document/8121862/|IEEEXplore|}} |
| − | * A. W. Eckford | ||
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| − | == | + | === 2017 === |
| + | * N. Farsad, Y. Murin, W. Guo, C.-B. Chae, A. W. Eckford, and A. Goldsmith, "Communication system design and analysis for asynchronous molecular timing channels," ''IEEE Transactions on Molecular, Biological, and Multi-Scale Communications'', vol. 3, no. 4, pp. 239-253, Dec. 2017.<br /> {{Open|https://arxiv.org/abs/1812.04476|arXiv|*}} {{Closed|https://ieeexplore.ieee.org/document/8561143/|IEEEXplore|}} | ||
| + | * Y. Fang, A. Noel, N. Yang, A. W. Eckford, and R. A. Kennedy, "Convex optimization of distributed cooperative detection in multi-receiver molecular communication," ''IEEE Transactions on Molecular, Biological, and Multi-Scale Communications'', vol. 3, no. 3, pp. 166-182, Sep. 2017. <br />{{Open|https://arxiv.org/abs/1611.05590|arXiv|*}} {{Closed|https://ieeexplore.ieee.org/document/8326548/|IEEEXplore|}} | ||
=== 2016 === | === 2016 === | ||
| − | * A. W. Eckford, | + | * P. J. Thomas and A. W. Eckford, "Capacity of a Simple Intercellular Signal Transduction Channel," ''IEEE Transactions on Information Theory'', vol. 62, no. 12, pp. 7358-7382, Dec. 2016. <br />{{Open|http://arxiv.org/abs/1411.1650|arXiv|*}} {{Closed|http://ieeexplore.ieee.org/document/7539683/|IEEEXplore|}} {{HighlyCited}} |
| + | * S. A. Banani, A. W. Eckford, and R. S. Adve, “Analyzing dependent placements of small cells in a two-layer heterogeneous network with a rate coverage constraint,” ''IEEE Transactions on Vehicular Technology'', vol. 65, no. 12, pp. 9801-9816, Dec. 2016. <br />{{Open|http://arxiv.org/abs/1609.06395|arXiv|*}} {{Closed|http://ieeexplore.ieee.org/document/7393879/|IEEEXplore}} | ||
| + | * N. Farsad, H. B. Yilmaz, A. W. Eckford, C.-B. Chae, and W. Guo, “A comprehensive survey of recent advancements in molecular communication,” ''IEEE Communications Surveys and Tutorials'', vol. 18, no. 3, pp. 1887-1919, third quarter 2016. <br />{{Open|http://ieeexplore.ieee.org/document/7405285/|IEEEXplore open access|}} {{HighlyCited}} | ||
| + | * W. Guo, T. Asyhari, N. Farsad, H. B. Yilmaz, B. Li, A. W. Eckford, C.-B. Chae, “Molecular communications: Channel model and physical layer techniques,” ''IEEE Wireless Communications'', vol. 23, no. 4, pp. 120-127, Aug. 2016. <br />{{Open|http://arxiv.org/abs/1507.07292|arXiv|*}} {{Closed|http://ieeexplore.ieee.org/document/7553035/|IEEEXplore|}} {{HighlyCited}} | ||
| + | * T. Furubayashi, T. Nakano, A. W. Eckford, Y. Okaie, and T. Yomo, “Packet fragmentation and reassembly in molecular communication,” ''IEEE Transactions on Nanobioscience'', vol. 15, no. 3, pp. 284-288, Apr. 2016.** <br />{{Closed|http://ieeexplore.ieee.org/document/7406714/|IEEEXplore}} | ||
| + | * B. Koo, C. Lee, H. B. Yilmaz, N. Farsad, A. W. Eckford, and C.-B. Chae, “Molecular MIMO: From theory to prototype,” ''IEEE Journal on Selected Areas in Communications'', vol. 34, no. 3, Mar. 2016. <br />{{Open|http://ieeexplore.ieee.org/document/7397863/|IEEEXplore open access|}} {{HighlyCited}} {{Media|http://spectrum.ieee.org/tech-talk/telecom/wireless/for-best-results-send-molecular-messages-through-mimo|IEEE Spectrum}} | ||
=== 2015 === | === 2015 === | ||
| − | + | * S. A. Banani, A. W. Eckford, and R. S. Adve, “Analyzing the impact of access point density on the performance of finite-area networks,” ''IEEE Transactions on Communications'', vol. 63, no. 12, pp. 5143-5161, Dec. 2015. <br />{{Open|https://arxiv.org/abs/1512.03338|arXiv|*}} {{Closed|http://ieeexplore.ieee.org/document/7275153/|IEEEXplore}} | |
| − | + | * N. Farsad, A. W. Eckford, and S. Hiyama, “Design and optimizing of on-chip kinesin substrates for molecular communication,” ''IEEE Transactions on Nanotechnology'', vol. 14, no. 4, pp. 699-708, Jul. 2015. <br />{{Open|https://arxiv.org/abs/1505.02202|arXiv|*}} {{Closed|http://ieeexplore.ieee.org/document/7105933/|IEEEXplore}} | |
| − | * S. A. Banani, A. W. Eckford, and R. S. Adve, | + | * S. F. Bush, J. L. Paluh, G. Piro, V. Rao, V. Prasad, and A. W. Eckford, “Defining communication at the bottom,” ''IEEE Transactions on Molecular, Biological, and Multi-Scale Communications'', vol. 1, no. 1, pp. 90-96, Mar. 2015. <br />{{Open|https://www.researchgate.net/publication/282526380_Defining_Communication_at_the_Bottom|ResearchGate|*}} {{Closed|http://ieeexplore.ieee.org/document/7181713/|IEEEXplore|}} {{HighlyCited}} |
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=== 2014 === | === 2014 === | ||
| − | * | + | * N. Farsad, N.-R. Kim, A. W. Eckford, and C.-B. Chae, “Channel and noise models for nonlinear molecular communication systems,” ''IEEE Journal on Selected Areas in Communications'', vol. 32, no. 12, pp. 2392-2401, Dec. 2014. <br />{{Open|http://arxiv.org/abs/1311.6208|arXiv|*}} {{Closed|http://ieeexplore.ieee.org/document/6949065/|IEEEXplore|}} {{HighlyCited}} |
| − | + | * N.-R. Kim, A. W. Eckford, and C.-B. Chae, “Symbol interval optimization for molecular communication with drift,” ''IEEE Transactions on Nanobioscience'', vol. 13, no. 3, pp. 223-229, Sep. 2014. <br />{{Open|http://arxiv.org/abs/1407.5776|arXiv|*}} {{Closed|http://ieeexplore.ieee.org/document/6881710/|IEEEXplore|}} {{HighlyCited}} | |
| − | * N.-R. Kim, | + | * N. Farsad, A. W. Eckford, and S. Hiyama, “A Markov chain channel model for active transport molecular communication,” ''IEEE Transactions on Signal Processing'', vol. 62, no. 9, pp. 2424-2436, May 2014. <br />{{Closed|http://ieeexplore.ieee.org/document/6766704/|IEEEXplore}} |
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=== 2013 === | === 2013 === | ||
| − | * | + | * N. Farsad, W. Guo, and A. W. Eckford, “Table-top molecular communication: Text messages through chemical signals,” ''PLOS ONE'', vol. 8, no. 12, 13 pp., Dec. 2013. <br />{{Open|1=http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0082935|2=PLOS One|3=}} {{HighlyCited}} {{Media|https://www.economist.com/technology-quarterly/2014/03/08/its-the-alcohol-talking|The Economist}} {{Media|https://www.wsj.com/articles/message-in-a-boozy-bottle-1388799352|The Wall Street Journal}} {{Media|http://news.nationalpost.com/news/how-canadian-scientists-used-a-mist-of-alcohol-to-develop-a-new-pheromone-inspired-way-to-send-text-messages|National Post}} {{Media|1=http://www.ctvnews.ca/video?clipId=263007|2=CTV News}} |
| − | * | + | * W. Guo, S. Wang, A. W. Eckford, and J. Wu, “Reliable communication envelopes of molecular diffusion channels,” ''Electronics Letters'', vol. 49, no. 19, pp. 1248—1249, 12 Sep. 2013. <br />{{Closed|http://ieeexplore.ieee.org/document/6612809/|IEEEXplore|}} {{Media|https://www.theiet.org/resources/journals/eletters/4919/data-in-the-wind.cfm|Electronics Letters featured article}} |
=== 2012 === | === 2012 === | ||
| − | * | + | * N. Farsad, A. W. Eckford, S. Hiyama, and Y. Moritani, “On-chip molecular communication: Analysis and design,” ''IEEE Transactions on Nanobioscience'', vol. 11, no. 3, pp. 304—314, Sep. 2012. <br />{{Closed|http://ieeexplore.ieee.org/document/6145759/|IEEEXplore|}} {{HighlyCited}} |
| − | * | + | * K. V. Srinivas, A. W. Eckford, and R. S. Adve, “Molecular communication in fluid media: The additive inverse Gaussian noise channel,” ''IEEE Transactions on Information Theory'', vol. 58, no. 7, pp. 4678—4692, Jul. 2012. <Br />{{Open|https://arxiv.org/abs/1012.0081|arXiv|*}} {{Closed|http://ieeexplore.ieee.org/document/6191345/|IEEEXplore|}} {{HighlyCited}} |
| − | * | + | * S. Kadloor, R. S. Adve, and A. W. Eckford, “Molecular communication using Brownian motion with drift,” ''IEEE Transactions on Nanobioscience'', vol. 11, no. 2, pp. 89—99, Jun. 2012. <br />{{Open|https://arxiv.org/abs/1006.3959|arXiv|*}} {{Closed|http://ieeexplore.ieee.org/document/6168841/|IEEEXplore|}} {{HighlyCited}} |
| − | * N. Farsad | + | * N. Farsad and A. W. Eckford, “Resource allocation via linear programming for fractional cooperation,” ''IEEE Transactions on Wireless Communications'', vol. 11, no. 5, pp. 1633—1637, May 2012. <br />{{Closed|http://ieeexplore.ieee.org/document/6170859/|IEEEXplore|}} |
=== 2011 === | === 2011 === | ||
| − | * N. Farsad, A. W. Eckford, | + | * N. Farsad, A. W. Eckford, S. Hiyama, and Y. Moritani, “Quick system design of vesicle-based active transport molecular communication by using a simple transport model,” ''Nano Communication Networks'', vol. 2, no. 4, pp. 175—188, 2011. <br />{{Closed|http://www.sciencedirect.com/science/article/pii/S1878778911000391|ScienceDirect|}} |
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Latest revision as of 08:15, 6 April 2024
A list of recent books and journal papers by lab members. Conference and other publications are listed on a separate page.
Links to papers are either open access or require subscription . A single asterisk (*) indicates that the version is not authoritative (e.g., preprint version).
Publications with (Highly Cited) have been cited at least 50 times (counts from Google Scholar).
Some publications have links to media coverage and other supplemental information.
In compliance with the Tri-Agency Open Access Policy, all journal publications since May 1, 2015 either have an open-access version, or were not supported by tri-agency funds (designated by **).
For publications prior to 2011, see: Older Publications
Contents
Books
- T. Nakano, A. W. Eckford, and T. Haraguchi, Molecular Communication, Cambridge: Cambridge University Press, 2013.
Google Books(partial preview) (Highly Cited)
Journal Papers
Preprints
- D. Jing, L. Lin, and A. W. Eckford, "Performance analysis and ISI mitigation with imperfect transmitter in molecular communication," to appear in IEEE Transactions on Nanobioscience.
arXiv* IEEEXplore early access - F. Gulec, D. Y. Koda, B. Atakan, and A. W. Eckford, "Localization of a passive source with a sensor network based experimental molecular communication platform," to appear in IEEE Transactions on Molecular, Biological, and Multi-Scale Communications.
arXiv* IEEEXplore early access - D. Jing, L. Lin, and A. W. Eckford, "Energy allocation for multi-user cooperative molecular communication systems in the internet of bio-nano things," to appear in IEEE Internet of Things Journal.
arXiv* IEEEXplore early access - Y. Qiu, Y. M. Kang, C. Korfmann, F. Pouyet, A. W. Eckford, and A. F. Palazzo, "The GC-content at the 5’ends of human protein-coding genes is undergoing mutational decay," BioRxiv 2024.03.12.584636, 2024.
bioRxiv*
2024
- Y. Parhizkar, G. Cheung, and A. W. Eckford, "Signal processing in the retina: Interpretable graph classifier to predict ganglion cell responses," IEEE Open Journal of Signal Processing, vol. 5, pp. 303-311, 2024.
IEEEXplore open access
2023
- H. Elayan, A. W. Eckford, and R. S. Adve, "Terahertz induced protein interactions in a random medium," IEEE Transactions on Molecular, Biological, and Multi-Scale Communications, vol. 9, no. 4, pp. 435-446, Dec. 2023.
arXiv* IEEEXplore - T. Sajjad and A. W. Eckford, "High-speed molecular communication in vacuum," IEEE Transactions on Molecular, Biological, and Multi-Scale Communications, vol. 9, no. 4, pp. 382-390, Dec. 2023.
arXiv* IEEEXplore - F. Gulec and A. W. Eckford, "A stochastic biofilm disruption model based on quorum sensing mimickers," IEEE Transactions on Molecular, Biological, and Multi-Scale Communications, vol. 9, no. 3, pp. 346-350, Sep. 2023.
arXiv* IEEEXplore - X. Chen, F. Ji, M. Wen, Y. Huang, and A. W. Eckford, "Mutual information rate of Gaussian and truncated Gaussian inputs on intensity-driven signal transduction channels," IEEE Communications Letters, vol. 27, no. 8, pp. 1989-1993, Aug. 2023.
arXiv* IEEEXplore - D. Jing and A. W. Eckford, "Lightweight channel codes for ISI mitigation in molecular communication between bionanosensors," IEEE Sensors Journal, vol. 23, no. 13, pp. 13859-13867, Jul. 2023.
arXiv* IEEEXplore - F. Gulec, F. Dressler, and A. W. Eckford, "A computational approach for the characterization of airborne pathogen transmission in turbulent molecular communication channels," IEEE Transactions on Molecular, Biological, and Multi-Scale Communications, vol. 9, no. 2, pp.124-134, Jun. 2023.
arXiv* IEEEXplore - W. D. Hunt, N. A. McCarty, E. M. Marin, R. S. Westafer, P. R. Yamin, G. Cui, A. W. Eckford, and D. R. Denison, "A transistor model for the cystic fibrosis transmembrane conductance regulator," Biophysical Reports, vol. 3, no. 2, 100108, Jun. 2023.
ScienceDirect open access - H. Elayan, A. W. Eckford, and R. S. Adve, "Selectivity of protein interactions stimulated by terahertz signals," IEEE Transactions on Nanobioscience, vol. 22, no. 2, pp. 318-328, Apr. 2023.
arXiv* IEEEXplore - Y. Fang, S. T. Johnston, M. Faria, X. Huang, A. W. Eckford, and J. Evans, “Molecular communication for quorum sensing inspired cooperative drug delivery,” IEEE Transactions on Molecular, Biological, and Multi-Scale Communications, vol. 9, no. 1, pp. 100-105, Mar. 2023.
arXiv* IEEEXplore
2022
- D. Chen, A. G. Strang, A. W. Eckford, and P. J. Thomas, "Explicitly solvable continuous-time inference for partially observed Markov processes," IEEE Transactions on Signal Processing, vol. 70, pp. 6232-6242, 2022.
arXiv* IEEEXplore - A. S. Moffett, G. Cui, P. J. Thomas, W. D. Hunt, N. A. McCarty, R. S. Westafer, and A. W. Eckford, "Permissive and nonpermissive channel closings in CFTR revealed by a factor graph inference algorithm," Biophysical Reports, vol. 2, no. 4, 100083, Dec. 2022.
ScienceDirect open access - X. Chen, M. Wen, F. Ji, Y. Huang, Y. Tang, and A. W. Eckford, “Detection interval of aerosol propagation from the perspective of molecular communication: How long is enough?” IEEE Journal on Selected Areas in Communications, vol. 40, no. 22, pp. 3255-3270, Nov. 2022.
arXiv* IEEEXplore - X. Chen, F. Ji, M. Wen, Y. Huang, Y. Tang, and A. W. Eckford, "Low complexity first: Duration-centric ISI mitigation in molecular communication via diffusion," IEEE Communications Letters, vol. 26, no. 11, pp. 2665-2669, Nov. 2022.
arXiv* IEEEXplore - A. S. Moffett, P. J. Thomas, M. Hinczewski, and A. W. Eckford, "Cheater suppression and stochastic clearance through quorum sensing," PLOS Computational Biology, vol. 18, no. 7, e1010292, Jul. 2022.
PLOS Computational Biology Phys.org IFLScience ScienceAlert - D. Jing, Y. Li, and A. W. Eckford, "An extended Kalman filter for distance estimation and power control in mobile molecular communication," IEEE Transactions on Communications, vol. 70, no. 7, pp. 4373-4385, Jul. 2022.
arXiv* IEEEXplore - A. S. Moffett and A. W. Eckford, "Minimal informational requirements for fitness," Physical Review E, vol. 105, no. 1, 014403, Jan. 2022.
arXiv* Physical Review Journals
2021
- X. Qian, M. Di Renzo, and A. W. Eckford, "K-Means Clustering-Aided Non-Coherent Detection for Molecular Communications," IEEE Transactions on Communications, vol. 69, no. 8, pp. 5456-5470, Aug. 2021.
arXiv* IEEEXplore - H. Awan, R. S. Adve, N. Wallbridge, C. Plummer, and A. W. Eckford, "Modelling the Role of Inter-cellular Communication in Modulating Photosynthesis in Plants," IEEE Transactions on Molecular, Biological, and Multi-Scale Communication, vol. 7, no. 2, pp. 94-99, Jun. 2021.
arXiv* IEEEXplore - Y. Fang, A. Noel. A. W. Eckford, N. Yang, and J. Guo, "Characterization of cooperators in quorum sensing with 2D molecular signal analysis," IEEE Transactions on Communications, vol. 69, no. 2, pp. 799-816, Feb. 2021.
arXiv* IEEEXplore - D. Jing, Y. Li, and A. W. Eckford, "Power control for ISI mitigation in mobile molecular communication," IEEE Communications Letters, vol. 25, no. 2, pp. 460-464, Feb. 2021.
arXiv* IEEEXplore - H. Elayan, A. W. Eckford, and R. Adve, "Information rates of controlled protein interactions using terahertz communication," IEEE Transactions on Nanobioscience, vol. 20, no. 1, pp. 9-19, Jan. 2021.
arXiv* IEEEXplore
2020
- A. S. Moffett, N. Wallbridge, C. Plummer, and A. W. Eckford, "The fitness value of information with delayed phenotype switching: Optimal performance with imperfect sensing," Physical Review E, vol. 102, no. 5, 052403, Nov. 2020.
arXiv* Physical Review Journals - H. Awan, K. Zeid, R. S. Adve, N. Wallbridge, C. Plummer, and A. W. Eckford, "Communication in plants: Comparison of multiple action potential and mechanosensitive signals with experiments," IEEE Transactions on Nanobioscience, vol. 19, no. 2, pp. 213-223, Apr. 2020.
arXiv* IEEEXplore TNB Featured Article - P. Hou, A. W. Eckford and L. Zhao, "Analysis and design of two-hop diffusion-based molecular communication with ligand receptors," IEEE Access, vol. 8, pp. 189458-189470, 2020.
IEEEXplore open access
2019
- A. Noel, S. Monabbati, D. Makrakis, and A. W. Eckford, "Modeling interference-free neuron spikes with optogenetic stimulation," IEEE Transactions on Molecular, Biological, and Multi-Scale Communications, vol. 5, no. 2, pp. 100-111, Nov. 2019.
arXiv* IEEEXplore - Y. Fang, A. Noel, N. Yang, A. W. Eckford, and R. A. Kennedy, "Symbol-by-symbol maximum likelihood detection for cooperative molecular communication," IEEE Transactions on Communications, vol. 67, no. 7, pp. 4885-4899, Jul. 2019.
arXiv* IEEEXplore - M. Mohseni, S. A. Banani, A. W. Eckford, and R. S. Adve, "Scheduling for VoLTE: Resource allocation optimization and low-complexity algorithms," IEEE Transactions on Wireless Communications, vol. 18, no. 3, pp. 1534-1547, Mar. 2019.
arXiv* IEEEXplore - H. Awan, R. S. Adve, N. Wallbridge, C. Plummer, and A. W. Eckford, "Communication and information theory of single action potential signals in plants," IEEE Transactions on Nanobioscience, vol. 18, no. 1, pp. 61-73, Jan. 2019.
arXiv* IEEEXplore - H. Awan, R. S. Adve, N. Wallbridge, C. Plummer and A. W. Eckford, "Information Theoretic Based Comparative Analysis of Different Communication Signals in Plants," IEEE Access, vol. 7, pp. 117075-117087, 2019.
IEEEXplore open access - N. Kim, N. Farsad, C. Lee, A. W. Eckford and C. Chae, "An experimentally validated channel model for molecular communication systems," IEEE Access, vol. 7, pp. 81849-81858, 2019.
IEEEXplore open access - X. Qian, M. Di Renzo and A. W. Eckford, "Molecular Communications: Model-Based and Data-Driven Receiver Design and Optimization," IEEE Access, vol. 7, pp. 53555-53565, 2019.
IEEEXplore open access
2018
- A. Noel, D. Makrakis, and A. W. Eckford, "Distortion distribution of neural spike train sequence matching with optogenetics," IEEE Transactions on Biomedical Engineering, vol. 65, no. 12, pp. 2814-2826, Dec. 2018.
arXiv* IEEEXplore TBME featured article - T. Furubayashi, Y. Sakatani, T. Nakano, A. W. Eckford, and N. Ichihashi, "Design and wet-laboratory implementation of reliable end-to-end molecular communication," Wireless Networks, vol. 24, no. 5, pp. 1809-1819, Jul. 2018.**
SpringerLink - N. Farsad, Y. Murin, A. W. Eckford, and A. Goldsmith, "Capacity limits of diffusion-based molecular timing channels with finite particle lifetime," IEEE Transactions on Molecular, Biological, and Multi-Scale Communications, vol. 4, no. 2, Jun. 2018.
arXiv* IEEEXplore - A. W. Eckford and P. J. Thomas, "The channel capacity of channelrhodopsin and other intensity-driven signal transduction receptors," IEEE Transactions on Molecular, Biological, and Multi-Scale Communications, vol. 4, no. 1, Mar. 2018.
arXiv* IEEEXplore - W. Guo, Y. Deng, H. B. Yilmaz, N. Farsad, M. Elkashlan, C.-B. Chae, A. W. Eckford, and A. Nallanathan, "SMIET: Simultaneous molecular information and energy transfer," IEEE Wireless Communications, vol. 25, no. 1, pp. 106-113, Feb. 2018.
arXiv* IEEEXplore
2017
- N. Farsad, Y. Murin, W. Guo, C.-B. Chae, A. W. Eckford, and A. Goldsmith, "Communication system design and analysis for asynchronous molecular timing channels," IEEE Transactions on Molecular, Biological, and Multi-Scale Communications, vol. 3, no. 4, pp. 239-253, Dec. 2017.
arXiv* IEEEXplore - Y. Fang, A. Noel, N. Yang, A. W. Eckford, and R. A. Kennedy, "Convex optimization of distributed cooperative detection in multi-receiver molecular communication," IEEE Transactions on Molecular, Biological, and Multi-Scale Communications, vol. 3, no. 3, pp. 166-182, Sep. 2017.
arXiv* IEEEXplore
2016
- P. J. Thomas and A. W. Eckford, "Capacity of a Simple Intercellular Signal Transduction Channel," IEEE Transactions on Information Theory, vol. 62, no. 12, pp. 7358-7382, Dec. 2016.
arXiv* IEEEXplore (Highly Cited) - S. A. Banani, A. W. Eckford, and R. S. Adve, “Analyzing dependent placements of small cells in a two-layer heterogeneous network with a rate coverage constraint,” IEEE Transactions on Vehicular Technology, vol. 65, no. 12, pp. 9801-9816, Dec. 2016.
arXiv* IEEEXplore - N. Farsad, H. B. Yilmaz, A. W. Eckford, C.-B. Chae, and W. Guo, “A comprehensive survey of recent advancements in molecular communication,” IEEE Communications Surveys and Tutorials, vol. 18, no. 3, pp. 1887-1919, third quarter 2016.
IEEEXplore open access (Highly Cited) - W. Guo, T. Asyhari, N. Farsad, H. B. Yilmaz, B. Li, A. W. Eckford, C.-B. Chae, “Molecular communications: Channel model and physical layer techniques,” IEEE Wireless Communications, vol. 23, no. 4, pp. 120-127, Aug. 2016.
arXiv* IEEEXplore (Highly Cited) - T. Furubayashi, T. Nakano, A. W. Eckford, Y. Okaie, and T. Yomo, “Packet fragmentation and reassembly in molecular communication,” IEEE Transactions on Nanobioscience, vol. 15, no. 3, pp. 284-288, Apr. 2016.**
IEEEXplore - B. Koo, C. Lee, H. B. Yilmaz, N. Farsad, A. W. Eckford, and C.-B. Chae, “Molecular MIMO: From theory to prototype,” IEEE Journal on Selected Areas in Communications, vol. 34, no. 3, Mar. 2016.
IEEEXplore open access (Highly Cited) IEEE Spectrum
2015
- S. A. Banani, A. W. Eckford, and R. S. Adve, “Analyzing the impact of access point density on the performance of finite-area networks,” IEEE Transactions on Communications, vol. 63, no. 12, pp. 5143-5161, Dec. 2015.
arXiv* IEEEXplore - N. Farsad, A. W. Eckford, and S. Hiyama, “Design and optimizing of on-chip kinesin substrates for molecular communication,” IEEE Transactions on Nanotechnology, vol. 14, no. 4, pp. 699-708, Jul. 2015.
arXiv* IEEEXplore - S. F. Bush, J. L. Paluh, G. Piro, V. Rao, V. Prasad, and A. W. Eckford, “Defining communication at the bottom,” IEEE Transactions on Molecular, Biological, and Multi-Scale Communications, vol. 1, no. 1, pp. 90-96, Mar. 2015.
ResearchGate* IEEEXplore (Highly Cited)
2014
- N. Farsad, N.-R. Kim, A. W. Eckford, and C.-B. Chae, “Channel and noise models for nonlinear molecular communication systems,” IEEE Journal on Selected Areas in Communications, vol. 32, no. 12, pp. 2392-2401, Dec. 2014.
arXiv* IEEEXplore (Highly Cited) - N.-R. Kim, A. W. Eckford, and C.-B. Chae, “Symbol interval optimization for molecular communication with drift,” IEEE Transactions on Nanobioscience, vol. 13, no. 3, pp. 223-229, Sep. 2014.
arXiv* IEEEXplore (Highly Cited) - N. Farsad, A. W. Eckford, and S. Hiyama, “A Markov chain channel model for active transport molecular communication,” IEEE Transactions on Signal Processing, vol. 62, no. 9, pp. 2424-2436, May 2014.
IEEEXplore
2013
- N. Farsad, W. Guo, and A. W. Eckford, “Table-top molecular communication: Text messages through chemical signals,” PLOS ONE, vol. 8, no. 12, 13 pp., Dec. 2013.
PLOS One (Highly Cited) The Economist The Wall Street Journal National Post CTV News - W. Guo, S. Wang, A. W. Eckford, and J. Wu, “Reliable communication envelopes of molecular diffusion channels,” Electronics Letters, vol. 49, no. 19, pp. 1248—1249, 12 Sep. 2013.
IEEEXplore Electronics Letters featured article
2012
- N. Farsad, A. W. Eckford, S. Hiyama, and Y. Moritani, “On-chip molecular communication: Analysis and design,” IEEE Transactions on Nanobioscience, vol. 11, no. 3, pp. 304—314, Sep. 2012.
IEEEXplore (Highly Cited) - K. V. Srinivas, A. W. Eckford, and R. S. Adve, “Molecular communication in fluid media: The additive inverse Gaussian noise channel,” IEEE Transactions on Information Theory, vol. 58, no. 7, pp. 4678—4692, Jul. 2012.
arXiv* IEEEXplore (Highly Cited) - S. Kadloor, R. S. Adve, and A. W. Eckford, “Molecular communication using Brownian motion with drift,” IEEE Transactions on Nanobioscience, vol. 11, no. 2, pp. 89—99, Jun. 2012.
arXiv* IEEEXplore (Highly Cited) - N. Farsad and A. W. Eckford, “Resource allocation via linear programming for fractional cooperation,” IEEE Transactions on Wireless Communications, vol. 11, no. 5, pp. 1633—1637, May 2012.
IEEEXplore
2011
- N. Farsad, A. W. Eckford, S. Hiyama, and Y. Moritani, “Quick system design of vesicle-based active transport molecular communication by using a simple transport model,” Nano Communication Networks, vol. 2, no. 4, pp. 175—188, 2011.
ScienceDirect
For publications prior to 2011, see: Older Publications
Conference and other publications are now listed on a separate page.
