Difference between revisions of "Publications"

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A list of recent publications by lab members.  
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A list of recent books and journal papers by lab members. [[Conference and other publications]] are listed on a separate page.
  
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Links to papers are either {{Open|https://en.wikipedia.org/wiki/Open_access|open access}} or {{Closed|https://en.wikipedia.org/wiki/Open_access_journal#Debate|require subscription}}. An asterisk (*) indicates that the version is not authoritative (e.g., preprint version).
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Links to papers are either {{Open|https://en.wikipedia.org/wiki/Open_access|open access}} or {{Closed|https://dictionary.cambridge.org/dictionary/english/subscription|require subscription}}. A single asterisk (*) indicates that the version is not authoritative (e.g., preprint version).
  
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Papers with {{HighlyCited}} have been cited at least 50 times (counts from Google Scholar).
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Publications with {{HighlyCited}} have been cited at least 50 times (counts from Google Scholar).
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Some publications have <span style="background:#CFEFFF">''links''</span> to media coverage and other supplemental information.
  
 
''In compliance with the [http://www.science.gc.ca/eic/site/063.nsf/eng/h_F6765465.html?OpenDocument Tri-Agency Open Access Policy], all journal publications since May 1, 2015 either have an open-access version, or were not supported by tri-agency funds (designated by **).''
 
''In compliance with the [http://www.science.gc.ca/eic/site/063.nsf/eng/h_F6765465.html?OpenDocument Tri-Agency Open Access Policy], all journal publications since May 1, 2015 either have an open-access version, or were not supported by tri-agency funds (designated by **).''
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== Books ==
 
== Books ==
  
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* {{HighlyCited}} T. Nakano, A. W. Eckford, and T. Haraguchi, ''Molecular Communication'', Cambridge: Cambridge University Press, 2013. {{Open|1=https://books.google.ca/books?id=uVhsAAAAQBAJ&printsec=frontcover#v=onepage&q&f=false|2=Google Books|3=''(partial preview)''}}
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* T. Nakano, A. W. Eckford, and T. Haraguchi, ''Molecular Communication'', Cambridge: Cambridge University Press, 2013. <br />{{Open|1=https://books.google.ca/books?id=uVhsAAAAQBAJ&printsec=frontcover#v=onepage&q&f=false|2=Google Books|3=''(partial preview)''}} {{HighlyCited}}
  
 
== Journal Papers ==
 
== Journal Papers ==
  
 
=== Preprints ===
 
=== Preprints ===
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* W. Guo, Y. Deng, H. B. Yilmaz, N. Farsad, M. Elkashlan, C.-B. Chae, A. W. Eckford, and A. Nallanathan, "SMIET: Simultaneous molecular information and energy transfer," accepted for publication in ''IEEE Wireless Communications Magazine''. {{Open|https://arxiv.org/abs/1605.09474|arXiv|*}}
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* H. Elayan, S. Elmaadawy, A. W. Eckford, R. S. Adve, and J. Jornet, "A thermal study of terahertz induced protein interactions," to appear in ''IEEE Transactions on Nanobioscience''.<br />{{Open|https://arxiv.org/abs/2406.19521|arXiv|*}} {{Closed|https://ieeexplore.ieee.org/abstract/document/10581408|IEEEXplore early access}}
  
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=== 2017 ===
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=== 2024 ===
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* T. Furubayashi, Y. Sakatani, T. Nakano. A. W. Eckford, and N. Ichihashi, "Design and wet-laboratory implementation of reliable end-to-end molecular communication," ''Wireless Networks'', doi:10.1007/s11276-016-1435-4, 2017.** {{Closed|http://link.springer.com/article/10.1007/s11276-016-1435-4|SpringerLink}}
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* Y. Qiu, Y. M. Kang, C. Korfmann, F. Pouyet, A. W. Eckford, and A. F. Palazzo, "The GC-content at the 5’ends of human protein-coding genes is undergoing mutational decay," ''Genome Biology,'' vol. 25, no. 219, 2024.<br />{{Open|https://www.biorxiv.org/content/10.1101/2024.03.12.584636v1.abstract|bioRxiv|*}} {{Open|https://link.springer.com/article/10.1186/s13059-024-03364-x|Springer open access|}}
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* D. Jing, L. Lin, and A. W. Eckford, "Performance analysis and ISI mitigation with imperfect transmitter in molecular communication," ''IEEE Transactions on Nanobioscience,'' vol. 23, no. 3, pp. 428-438, Jul. 2024.<br />{{Open|https://arxiv.org/abs/2404.02383|arXiv|*}} {{Closed|https://ieeexplore.ieee.org/abstract/document/10466618|IEEEXplore}}
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* F. Gulec, D. Y. Koda, B. Atakan, and A. W. Eckford, "Localization of a passive source with a sensor network based experimental molecular communication platform," ''IEEE Transactions on Molecular, Biological, and Multi-Scale Communications,'' vol. 10, no. 2, pp. 223-235, Jun. 2024.<br />{{Open|https://arxiv.org/abs/2311.16848|arXiv|*}} {{Closed|https://ieeexplore.ieee.org/abstract/document/10470431|IEEEXplore}}
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* D. Jing, L. Lin, and A. W. Eckford, "Energy allocation for multi-user cooperative molecular communication systems in the internet of bio-nano things," ''IEEE Internet of Things Journal,'' vol. 11, no. 9, pp. 16303-16313, May 2024.<br />{{Open|https://arxiv.org/abs/2404.02286|arXiv|*}} {{Closed|https://ieeexplore.ieee.org/abstract/document/10398486|IEEEXplore}}
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* Y. Parhizkar, G. Cheung, and A. W. Eckford, "Signal processing in the retina: Interpretable graph classifier to predict ganglion cell responses," ''IEEE Open Journal of Signal Processing,'' vol. 5, pp. 303-311, 2024.<br /> {{Open|https://ieeexplore.ieee.org/document/10379097|IEEEXplore open access}}
  
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=== 2016 ===
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=== 2023 ===
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* P. J. Thomas and A. W. Eckford, "Capacity of a Simple Intercellular Signal Transduction Channel," ''IEEE Transactions on Information Theory'', vol. 62, no. 12, pp. 7358-7382, Dec. 2016. {{Open|http://arxiv.org/abs/1411.1650|arXiv|*}} {{Closed|http://ieeexplore.ieee.org/document/7539683/|IEEEXplore}}
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* H. Elayan, A. W. Eckford, and R. S. Adve, "Terahertz induced protein interactions in a random medium," ''IEEE Transactions on Molecular, Biological, and Multi-Scale Communications,'' vol. 9, no. 4, pp. 435-446, Dec. 2023.<br />{{Open|https://arxiv.org/abs/2310.14519|arXiv|*}} {{Closed|https://ieeexplore.ieee.org/document/10294246|IEEEXplore}}
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* S. A. Banani, A. W. Eckford, and R. S. Adve, “Analyzing dependent placements of small cells in a two-layer heterogeneous network with a rate coverage constraint,” ''IEEE Transactions on Vehicular Technology'', vol. 65, no. 12, pp. 9801-9816, Dec. 2016. {{Open|http://arxiv.org/abs/1609.06395|arXiv|*}} {{Closed|http://ieeexplore.ieee.org/document/7393879/|IEEEXplore}}
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* T. Sajjad and A. W. Eckford, "High-speed molecular communication in vacuum," ''IEEE Transactions on Molecular, Biological, and Multi-Scale Communications,'' vol. 9, no. 4, pp. 382-390, Dec. 2023.<br />{{Open|https://arxiv.org/abs/2307.11804|arXiv|*}} {{Closed|https://ieeexplore.ieee.org/document/10198389|IEEEXplore}}
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* {{HighlyCited}} N. Farsad, H. B. Yilmaz, A. W. Eckford, C.-B. Chae, and W. Guo, “A comprehensive survey of recent advancements in molecular communication,” ''IEEE Communications Surveys and Tutorials'', vol. 18, no. 3, pp. 1887-1919, third quarter 2016. {{Open|http://ieeexplore.ieee.org/document/7405285/|IEEEXplore open access}}
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* F. Gulec and A. W. Eckford, "A stochastic biofilm disruption model based on quorum sensing mimickers," ''IEEE Transactions on Molecular, Biological, and Multi-Scale Communications,'' vol. 9, no. 3, pp. 346-350, Sep. 2023.<br />{{Open|https://arxiv.org/abs/2301.13015|arXiv|*}} {{Closed|https://ieeexplore.ieee.org/document/10173543|IEEEXplore}}
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* W. Guo, T. Asyhari, N. Farsad, H. B. Yilmaz, B. Li, A. W. Eckford, C.-B. Chae, “Molecular communications: Channel model and physical layer techniques,” ''IEEE Wireless Communications Magazine'', vol. 23, no. 4, pp. 120-127, Aug. 2016. {{Open|http://arxiv.org/abs/1507.07292|arXiv|*}} {{Closed|http://ieeexplore.ieee.org/document/7553035/|IEEEXplore}}
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* X. Chen, F. Ji, M. Wen, Y. Huang, and A. W. Eckford, "Mutual information rate of Gaussian and truncated Gaussian inputs on intensity-driven signal transduction channels," ''IEEE Communications Letters,'' vol. 27, no. 8, pp. 1989-1993, Aug. 2023.<br />{{Open|https://arxiv.org/abs/2306.15421|arXiv|*}} {{Closed|https://ieeexplore.ieee.org/document/10163393|IEEEXplore}}
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* T. Furubayashi, T. Nakano, A. W. Eckford, Y. Okaie, and T. Yomo, “Packet fragmentation and reassembly in molecular communication,” ''IEEE Transactions on Nanobioscience'', vol. 15, no. 3, pp. 284-288, Apr. 2016.** {{Closed|http://ieeexplore.ieee.org/document/7406714/|IEEEXplore}}
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* D. Jing and A. W. Eckford, "Lightweight channel codes for ISI mitigation in molecular communication between bionanosensors," ''IEEE Sensors Journal,'' vol. 23, no. 13, pp. 13859-13867, Jul. 2023.<br />{{Open|https://arxiv.org/abs/2305.14001|arXiv|*}} {{Closed|https://ieeexplore.ieee.org/document/10134568|IEEEXplore}}
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* B. Koo, C. Lee, H. B. Yilmaz, N. Farsad, A. W. Eckford, and C.-B. Chae, “Molecular MIMO: From theory to prototype,” ''IEEE Journal on Selected Areas in Communications'', vol. 34, no. 3, Mar. 2016. {{Open|http://ieeexplore.ieee.org/document/7397863/|IEEEXplore open access}}
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* F. Gulec, F. Dressler, and A. W. Eckford, "A computational approach for the characterization of airborne pathogen transmission in turbulent molecular communication channels," ''IEEE Transactions on Molecular, Biological, and Multi-Scale Communications,'' vol. 9, no. 2, pp.124-134, Jun. 2023.<br />{{Open|https://arxiv.org/abs/2305.01412|arXiv|*}} {{Closed|https://ieeexplore.ieee.org/document/10115295|IEEEXplore}}
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* W. D. Hunt, N. A. McCarty, E. M. Marin, R. S. Westafer, P. R. Yamin, G. Cui, A. W. Eckford, and D. R. Denison, "A transistor model for the cystic fibrosis transmembrane conductance regulator," ''Biophysical Reports'', vol. 3, no. 2, 100108, Jun. 2023.<br />{{Open|https://www.sciencedirect.com/science/article/pii/S2667074723000095|ScienceDirect open access|}}
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* H. Elayan, A. W. Eckford, and R. S. Adve, "Selectivity of protein interactions stimulated by terahertz signals," ''IEEE Transactions on Nanobioscience,'' vol. 22, no. 2, pp. 318-328, Apr. 2023.<br /> {{Open|https://arxiv.org/abs/2207.01572|arXiv|*}} {{Closed|https://ieeexplore.ieee.org/document/9819908|IEEEXplore}}
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* Y. Fang, S. T. Johnston, M. Faria, X. Huang, A. W. Eckford, and J. Evans, “Molecular communication for quorum sensing inspired cooperative drug delivery,” ''IEEE Transactions on Molecular, Biological, and Multi-Scale Communications,'' vol. 9, no. 1, pp. 100-105, Mar. 2023.<br /> {{Open|https://arxiv.org/abs/2303.08015|arXiv|*}} {{Closed|https://ieeexplore.ieee.org/abstract/document/10035488|IEEEXplore}}
  
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=== 2015 ===
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=== 2022 ===
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* S. A. Banani, A. W. Eckford, and R. S. Adve, “Analyzing the impact of access point density on the performance of finite-area networks,” ''IEEE Transactions on Communications'', vol. 63, no. 12, pp. 5143-5161, Dec. 2015. {{Open|https://arxiv.org/abs/1512.03338|arXiv|*}} {{Closed|http://ieeexplore.ieee.org/document/7275153/|IEEEXplore}}
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* D. Chen, A. G. Strang, A. W. Eckford, and P. J. Thomas, "Explicitly solvable continuous-time inference for partially observed Markov processes," ''IEEE Transactions on Signal Processing,'' vol. 70, pp. 6232-6242, 2022.<br /> {{Open|https://arxiv.org/abs/2301.00843|arXiv|*}} {{Closed|https://ieeexplore.ieee.org/document/10007059|IEEEXplore}}
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* N. Farsad, A. W. Eckford, and S. Hiyama, “Design and optimizing of on-chip kinesin substrates for molecular communication,” ''IEEE Transactions on Nanotechnology'', vol. 14, no. 4, pp. 699-708, Jul. 2015. {{Open|https://arxiv.org/abs/1505.02202|arXiv|*}} {{Closed|http://ieeexplore.ieee.org/document/7105933/|IEEEXplore}}
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* A. S. Moffett, G. Cui, P. J. Thomas, W. D. Hunt, N. A. McCarty, R. S. Westafer, and A. W. Eckford, "Permissive and nonpermissive channel closings in CFTR revealed by a factor graph inference algorithm," ''Biophysical Reports'', vol. 2, no. 4, 100083, Dec. 2022.<br />{{Open|https://www.sciencedirect.com/science/article/pii/S2667074722000404|ScienceDirect open access}}
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* S. F. Bush, J. L. Paluh, G. Piro, V. Rao, V. Prasad, and A. W. Eckford, “Defining communication at the bottom,” ''IEEE Transactions on Molecular, Biological, and Multi-Scale Communications'', vol. 1, no. 1, pp. 90-96, Mar. 2015. {{Open|https://www.researchgate.net/publication/282526380_Defining_Communication_at_the_Bottom ResearchGate|*}} {{Closed|http://ieeexplore.ieee.org/document/7181713/|IEEEXplore}}
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* X. Chen, M. Wen, F. Ji, Y. Huang, Y. Tang, and A. W. Eckford, “Detection interval of aerosol propagation from the perspective of molecular communication: How long is enough?” ''IEEE Journal on Selected Areas in Communications,'' vol. 40, no. 22, pp. 3255-3270, Nov. 2022.<br /> {{Open|https://arxiv.org/abs/2204.08636|arXiv|*}} {{Closed|https://ieeexplore.ieee.org/document/9913432|IEEEXplore}}
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* X. Chen, F. Ji, M. Wen, Y. Huang, Y. Tang, and A. W. Eckford, "Low complexity first: Duration-centric ISI mitigation in molecular communication via diffusion," ''IEEE Communications Letters,'' vol. 26, no. 11, pp. 2665-2669, Nov. 2022.<br />{{Open|https://arxiv.org/abs/2207.09565|arXiv|*}} {{Closed|https://ieeexplore.ieee.org/document/9840365|IEEEXplore}}
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* A. S. Moffett, P. J. Thomas, M. Hinczewski, and A. W. Eckford, "Cheater suppression and stochastic clearance through quorum sensing," ''PLOS Computational Biology,'' vol. 18, no. 7, e1010292, Jul. 2022.<br />{{Open|1=https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1010292|2=PLOS Computational Biology|3=}} {{Media|https://phys.org/news/2022-07-reveals-spiteful-behaviour-bacteria.html|Phys.org}} {{Media|https://www.iflscience.com/bacteria-can-behave-spitefully-to-those-that-dont-support-the-colony-64775|IFLScience}} {{Media|https://www.sciencealert.com/even-bacteria-hate-freeloaders|ScienceAlert}}
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* D. Jing, Y. Li, and A. W. Eckford, "An extended Kalman filter for distance estimation and power control in mobile molecular communication," ''IEEE Transactions on Communications,'' vol. 70, no. 7, pp. 4373-4385, Jul. 2022.<br />{{Open|https://arxiv.org/abs/2205.09596|arXiv|*}} {{Closed|https://ieeexplore.ieee.org/document/9780147|IEEEXplore|}}
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* A. S. Moffett and A. W. Eckford, "Minimal informational requirements for fitness," ''Physical Review E,'' vol. 105, no. 1, 014403, Jan. 2022. <br /> {{Open|http://arxiv.org/abs/2112.02193|arXiv|*}} {{Closed|https://journals.aps.org/pre/abstract/10.1103/PhysRevE.105.014403|Physical Review Journals|}}
  
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=== 2014 ===
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=== 2021 ===
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* N. Farsad, N.-R. Kim, A. W. Eckford, and C.-B. Chae, “Channel and noise models for nonlinear molecular communication systems,” ''IEEE Journal on Selected Areas in Communications'', vol. 32, no. 12, pp. 2392-2401, Dec. 2014. {{Open|http://arxiv.org/abs/1311.6208|arXiv|*}} {{Closed|http://ieeexplore.ieee.org/document/6949065/|IEEEXplore}}
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* X. Qian, M. Di Renzo, and A. W. Eckford, "K-Means Clustering-Aided Non-Coherent Detection for Molecular Communications," ''IEEE Transactions on Communications,'' vol. 69, no. 8, pp. 5456-5470, Aug. 2021.<br />{{Open|https://arxiv.org/abs/2104.08929|arXiv|*}} {{Closed|https://ieeexplore.ieee.org/document/9415646|IEEEXplore|}}
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* N.-R. Kim, A. W. Eckford, and C.-B. Chae, “Symbol interval optimization for molecular communication with drift,” ''IEEE Transactions on Nanobioscience'', vol. 13, no. 3, pp. 223-229, Sep. 2014. {{Open|http://arxiv.org/abs/1407.5776|arXiv|*}} {{Closed|http://ieeexplore.ieee.org/document/6881710/|IEEEXplore}}
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* H. Awan, R. S. Adve, N. Wallbridge, C. Plummer, and A. W. Eckford, "Modelling the Role of Inter-cellular Communication in Modulating Photosynthesis in Plants," ''IEEE Transactions on Molecular, Biological, and Multi-Scale Communication,'' vol. 7, no. 2, pp. 94-99, Jun. 2021.<br />{{Open|https://arxiv.org/abs/2103.15773|arXiv|*}} {{Closed|https://ieeexplore.ieee.org/document/9399099|IEEEXplore|}}
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* N. Farsad, A. W. Eckford, and S. Hiyama, “A Markov chain channel model for active transport molecular communication,” ''IEEE Transactions on Signal Processing'', vol. 62, no. 9, pp. 2424-2436, May 2014. {{Closed|http://ieeexplore.ieee.org/document/6766704/|IEEEXplore}}
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* Y. Fang, A. Noel. A. W. Eckford, N. Yang, and J. Guo, "Characterization of cooperators in quorum sensing with 2D molecular signal analysis," ''IEEE Transactions on Communications,'' vol. 69, no. 2, pp. 799-816, Feb. 2021.<br />{{Open|https://arxiv.org/abs/2006.04706|arXiv|*}} {{Closed|https://ieeexplore.ieee.org/document/9252184|IEEEXplore|}}
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* D. Jing, Y. Li, and A. W. Eckford, "Power control for ISI mitigation in mobile molecular communication," ''IEEE Communications Letters,'' vol. 25, no. 2, pp. 460-464, Feb. 2021.<br /> {{Open|https://arxiv.org/abs/2008.12368|arXiv|*}} {{Closed|https://ieeexplore.ieee.org/document/9184099|IEEEXplore|}}
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* H. Elayan, A. W. Eckford, and R. Adve, "Information rates of controlled protein interactions using terahertz communication," ''IEEE Transactions on Nanobioscience'', vol. 20, no. 1, pp. 9-19, Jan. 2021.<br /> {{Open|https://arxiv.org/abs/2009.01060|arXiv|*}} {{Closed|https://ieeexplore.ieee.org/document/9186627|IEEEXplore|}}
  
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=== 2013 ===
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=== 2020 ===
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* {{HighlyCited}} N. Farsad, W. Guo, and A. W. Eckford, “Table-top molecular communication: Text messages through chemical signals,” ''PLOS ONE'', vol. 8, no. 12, 13 pp., Dec. 2013. {{Open|1=http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0082935|2=PLOS One}}
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* A. S. Moffett, N. Wallbridge, C. Plummer, and A. W. Eckford, "The fitness value of information with delayed phenotype switching: Optimal performance with imperfect sensing," ''Physical Review E,'' vol. 102, no. 5, 052403, Nov. 2020.<br />{{Open|https://arxiv.org/abs/2009.00058|arXiv|*}} {{Closed|https://journals.aps.org/pre/abstract/10.1103/PhysRevE.102.052403|Physical Review Journals|}}
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* W. Guo, S. Wang, A. W. Eckford, and J. Wu, “Reliable communication envelopes of molecular diffusion channels,” ''Electronics Letters'', vol. 49, no. 19, pp. 1248—1249, 12 Sep. 2013.  {{Closed|http://ieeexplore.ieee.org/document/6612809/|IEEEXplore}}
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* H. Awan, K. Zeid, R. S. Adve, N. Wallbridge, C. Plummer, and A. W. Eckford, "Communication in plants: Comparison of multiple action potential and mechanosensitive signals with experiments," ''IEEE Transactions on Nanobioscience,'' vol. 19, no. 2, pp. 213-223, Apr. 2020.<br /> {{Open|https://arxiv.org/abs/1911.04895|arXiv|*}} {{Closed|https://ieeexplore.ieee.org/document/8890624|IEEEXplore|}} {{Media|https://www.embs.org/tnb/articles/communication-in-plants-comparison-of-multiple-action-potential-and-mechanosensitive-signals-with-experiments/|TNB Featured Article}}
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* P. Hou, A. W. Eckford and L. Zhao, "Analysis and design of two-hop diffusion-based molecular communication with ligand receptors," ''IEEE Access'', vol. 8, pp. 189458-189470, 2020.<br />{{Open|https://ieeexplore.ieee.org/document/9233383|IEEEXplore open access|}}
  
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=== 2012 ===
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=== 2019 ===
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* {{HighlyCited}} N. Farsad, A. W. Eckford, S. Hiyama, and Y. Moritani, “On-chip molecular communication: Analysis and design,” ''IEEE Transactions on Nanobioscience'', vol. 11, no. 3, pp. 304—314, Sep. 2012. {{Closed|http://ieeexplore.ieee.org/document/6145759/|IEEEXplore}}
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* A. Noel, S. Monabbati, D. Makrakis, and A. W. Eckford, "Modeling interference-free neuron spikes with optogenetic stimulation," ''IEEE Transactions on Molecular, Biological, and Multi-Scale Communications,'' vol. 5, no. 2, pp. 100-111, Nov. 2019.<br /> {{Open|https://arxiv.org/abs/1905.05678|arXiv|*}} {{Closed|https://ieeexplore.ieee.org/document/9040660|IEEEXplore|}}
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* {{HighlyCited}} K. V. Srinivas, A. W. Eckford, and R. S. Adve, “Molecular communication in fluid media: The additive inverse Gaussian noise channel,” ''IEEE Transactions on Information Theory'', vol. 58, no. 7, pp. 4678—4692, Jul. 2012. {{Open|https://arxiv.org/abs/1012.0081|arXiv|*}} {{Closed|http://ieeexplore.ieee.org/document/6191345/|IEEEXplore}}
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* Y. Fang, A. Noel, N. Yang, A. W. Eckford, and R. A. Kennedy, "Symbol-by-symbol maximum likelihood detection for cooperative molecular communication," ''IEEE Transactions on Communications,'' vol. 67, no. 7, pp. 4885-4899, Jul. 2019.<br /> {{Open|https://arxiv.org/abs/1801.02890|arXiv|*}} {{Closed|https://ieeexplore.ieee.org/document/8685182|IEEEXplore|}}
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* {{HighlyCited}} S. Kadloor, R. S. Adve, and A. W. Eckford, “Molecular communication using Brownian motion with drift,” ''IEEE Transactions on Nanobioscience'', vol. 11, no. 2, pp. 89—99, Jun. 2012. {{Open|https://arxiv.org/abs/1006.3959|arXiv|*}} {{Closed|http://ieeexplore.ieee.org/document/6168841/|IEEEXplore}}
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* M. Mohseni, S. A. Banani, A. W. Eckford, and R. S. Adve, "Scheduling for VoLTE: Resource allocation optimization and low-complexity algorithms," ''IEEE Transactions on Wireless Communications'', vol. 18, no. 3, pp. 1534-1547, Mar. 2019.<br /> {{Open|https://arxiv.org/abs/1901.02111|arXiv|*}} {{Closed|https://ieeexplore.ieee.org/document/8617701|IEEEXplore|}}
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* N. Farsad and A. W. Eckford, “Resource allocation via linear programming for fractional cooperation,” ''IEEE Transactions on Wireless Communications'', vol. 11, no. 5, pp. 1633—1637, May 2012. {{Closed|http://ieeexplore.ieee.org/document/6170859/|IEEEXplore}}
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* H. Awan, R. S. Adve, N. Wallbridge, C. Plummer, and A. W. Eckford, "Communication and information theory of single action potential signals in plants," ''IEEE Transactions on Nanobioscience'', vol. 18, no. 1, pp. 61-73, Jan. 2019. <br /> {{Open|https://arxiv.org/abs/1811.03612|arXiv|*}} {{Closed|https://ieeexplore.ieee.org/document/8533407|IEEEXplore|}}
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* H. Awan, R. S. Adve, N. Wallbridge, C. Plummer and A. W. Eckford, "Information Theoretic Based Comparative Analysis of Different Communication Signals in Plants," ''IEEE Access'', vol. 7, pp. 117075-117087, 2019.<br /> {{Open|https://ieeexplore.ieee.org/document/8792048|IEEEXplore open access|}}
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* N. Kim, N. Farsad, C. Lee, A. W. Eckford and C. Chae, "An experimentally validated channel model for molecular communication systems," ''IEEE Access'', vol. 7, pp. 81849-81858, 2019.<br />{{Open|https://ieeexplore.ieee.org/document/8746073|IEEEXplore open access|}}
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* X. Qian, M. Di Renzo and A. W. Eckford, "Molecular Communications: Model-Based and Data-Driven Receiver Design and Optimization," ''IEEE Access'', vol. 7, pp. 53555-53565, 2019.<br /> {{Open|https://ieeexplore.ieee.org/document/8695004|IEEEXplore open access|}}
  
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=== 2011 ===
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=== 2018 ===
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* N. Farsad, A. W. Eckford, S. Hiyama, and Y. Moritani, “Quick system design of vesicle-based active transport molecular communication by using a simple transport model,” ''Nano Communication Networks'', vol. 2, no. 4, pp. 175—188, 2011. {{Closed|http://www.sciencedirect.com/science/article/pii/S1878778911000391|ScienceDirect}}
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* A. Noel, D. Makrakis, and A. W. Eckford, "Distortion distribution of neural spike train sequence matching with optogenetics," ''IEEE Transactions on Biomedical Engineering,'' vol. 65, no. 12, pp. 2814-2826, Dec. 2018. <br />{{Open|https://arxiv.org/abs/1708.06641|arXiv|*}} {{Closed|https://ieeexplore.ieee.org/document/8325330|IEEEXplore|}} {{Media|https://web.archive.org/web/20190101043934/https://tbme.embs.org/|TBME featured article}}
−
 
+
* T. Furubayashi, Y. Sakatani, T. Nakano, A. W. Eckford, and N. Ichihashi, "Design and wet-laboratory implementation of reliable end-to-end molecular communication," ''Wireless Networks'', vol. 24, no. 5, pp. 1809-1819, Jul. 2018.** <br />{{Closed|http://link.springer.com/article/10.1007/s11276-016-1435-4|SpringerLink}}
−
''For publications prior to 2011, see: [[Older Publications]]''
+
* N. Farsad, Y. Murin, A. W. Eckford, and A. Goldsmith, "Capacity limits of diffusion-based molecular timing channels with finite particle lifetime," ''IEEE Transactions on Molecular, Biological, and Multi-Scale Communications'', vol. 4, no. 2, Jun. 2018.<br /> {{Open|https://arxiv.org/abs/1602.07757|arXiv|*}} {{Closed|https://ieeexplore.ieee.org/document/8653985|IEEEXplore|}}
−
 
+
* A. W. Eckford and P. J. Thomas, "The channel capacity of channelrhodopsin and other intensity-driven signal transduction receptors," ''IEEE Transactions on Molecular, Biological, and Multi-Scale Communications'', vol. 4, no. 1, Mar. 2018.<br /> {{Open|https://arxiv.org/abs/1804.04533|arXiv|*}} {{Closed|https://ieeexplore.ieee.org/document/8627967|IEEEXplore|}}
−
== Conference Papers ==
+
* W. Guo, Y. Deng, H. B. Yilmaz, N. Farsad, M. Elkashlan, C.-B. Chae, A. W. Eckford, and A. Nallanathan, "SMIET: Simultaneous molecular information and energy transfer," ''IEEE Wireless Communications,'' vol. 25, no. 1, pp. 106-113, Feb. 2018. <br />{{Open|https://arxiv.org/abs/1605.09474|arXiv|*}} {{Closed|http://ieeexplore.ieee.org/abstract/document/8121862/|IEEEXplore|}}
  
 
=== 2017 ===
 
=== 2017 ===
−
* A. Noel, D. Makrakis, and A. W. Eckford, "Root mean square error of neural spike train sequence matching with optogenetics," in Proc. IEEE Global Communications Conference (GLOBECOM), Singapore, 2017. {{Open|https://arxiv.org/abs/1704.04795|arXiv|*}}
+
* N. Farsad, Y. Murin, W. Guo, C.-B. Chae, A. W. Eckford, and A. Goldsmith, "Communication system design and analysis for asynchronous molecular timing channels," ''IEEE Transactions on Molecular, Biological, and Multi-Scale Communications'', vol. 3, no. 4, pp. 239-253, Dec. 2017.<br /> {{Open|https://arxiv.org/abs/1812.04476|arXiv|*}} {{Closed|https://ieeexplore.ieee.org/document/8561143/|IEEEXplore|}}
−
* A. Noel, Y. Fang, N. Yang, D. Makrakis, A. W. Eckford, "Effect of local population uncertainty on cooperation in bacteria," to appear in Proc. IEEE Information Theory Workshop, Kaohsiung, Taiwan, 2017. {{Open|https://arxiv.org/abs/1708.06305|arXiv|*}}
+
* Y. Fang, A. Noel, N. Yang, A. W. Eckford, and R. A. Kennedy, "Convex optimization of distributed cooperative detection in multi-receiver molecular communication," ''IEEE Transactions on Molecular, Biological, and Multi-Scale Communications'', vol. 3, no. 3, pp. 166-182, Sep. 2017. <br />{{Open|https://arxiv.org/abs/1611.05590|arXiv|*}} {{Closed|https://ieeexplore.ieee.org/document/8326548/|IEEEXplore|}}
−
* L. Wang and A. W. Eckford, "Nonnegative code division multiple access techniques in molecular communication," in Proc. 15th Canadian Workshop on Information Theory, Quebec City, QC, Canada, 2017.
 
−
* A. Noel and A. W. Eckford, "Asynchronous peak detection for demodulation in molecular communication," in Proc. IEEE International Conference on Communications (ICC), Paris, France, 2017. {{Open|https://arxiv.org/abs/1611.00459|arXiv|*}}
 
  
 
=== 2016 ===
 
=== 2016 ===
−
* Y. Fang, A. Noel, N. Yang, A. W. Eckford, and R. A. Kennedy, "Distributed cooperative detection for multi-receiver molecular communication," in Proc. IEEE Global Communications Conference (GLOBECOM), Washington, DC, USA, 2016. {{Open|http://arxiv.org/abs/1604.03660|arXiv|*}}
+
* P. J. Thomas and A. W. Eckford, "Capacity of a Simple Intercellular Signal Transduction Channel," ''IEEE Transactions on Information Theory'', vol. 62, no. 12, pp. 7358-7382, Dec. 2016. <br />{{Open|http://arxiv.org/abs/1411.1650|arXiv|*}} {{Closed|http://ieeexplore.ieee.org/document/7539683/|IEEEXplore|}} {{HighlyCited}}
−
* N. Farsad, Y. Murin, W. Guo, C.-B. Chae, A. W. Eckford, and A. Goldsmith, "On the impact of time-synchronization in molecular timing channels," in Proc. IEEE Global Communications Conference (GLOBECOM), Washington, DC, USA, 2016. {{Open|http://arxiv.org/abs/1609.02109|arXiv|*}}
+
* S. A. Banani, A. W. Eckford, and R. S. Adve, “Analyzing dependent placements of small cells in a two-layer heterogeneous network with a rate coverage constraint,” ''IEEE Transactions on Vehicular Technology'', vol. 65, no. 12, pp. 9801-9816, Dec. 2016. <br />{{Open|http://arxiv.org/abs/1609.06395|arXiv|*}} {{Closed|http://ieeexplore.ieee.org/document/7393879/|IEEEXplore}}
−
* A. W. Eckford, T. Furubayashi, and T. Nakano, “RNA as a nanoscale data transmission medium: Error analysis,” in Proc. IEEE International Conference on Nanotechnology (NANO), Sendai, Japan, 2016. {{Open|http://arxiv.org/abs/1609.07329|arXiv|*}}
+
* N. Farsad, H. B. Yilmaz, A. W. Eckford, C.-B. Chae, and W. Guo, “A comprehensive survey of recent advancements in molecular communication,” ''IEEE Communications Surveys and Tutorials'', vol. 18, no. 3, pp. 1887-1919, third quarter 2016. <br />{{Open|http://ieeexplore.ieee.org/document/7405285/|IEEEXplore open access|}} {{HighlyCited}}  
−
* N. Farsad, Y. Murin, A. W. Eckford, and A. Goldsmith, “On the capacity of diffusion-based molecular timing channels,” in Proc. IEEE International Symposium on Information Theory (ISIT), Barcelona, Spain, 2016. {{Open|http://arxiv.org/abs/1604.06409|arXiv|*}}
+
* W. Guo, T. Asyhari, N. Farsad, H. B. Yilmaz, B. Li, A. W. Eckford, C.-B. Chae, “Molecular communications: Channel model and physical layer techniques,” ''IEEE Wireless Communications'', vol. 23, no. 4, pp. 120-127, Aug. 2016. <br />{{Open|http://arxiv.org/abs/1507.07292|arXiv|*}} {{Closed|http://ieeexplore.ieee.org/document/7553035/|IEEEXplore|}} {{HighlyCited}}
−
* P. J. Thomas and A. W. Eckford, “Shannon capacity of signal transduction for multiple independent receptors,” in Proc. IEEE International Symposium on Information Theory (ISIT), Barcelona, Spain, 2016. {{Open|http://arxiv.org/abs/1604.03508|arXiv|*}}
+
* T. Furubayashi, T. Nakano, A. W. Eckford, Y. Okaie, and T. Yomo, “Packet fragmentation and reassembly in molecular communication,” ''IEEE Transactions on Nanobioscience'', vol. 15, no. 3, pp. 284-288, Apr. 2016.** <br />{{Closed|http://ieeexplore.ieee.org/document/7406714/|IEEEXplore}}
−
* A. W. Eckford, K. Loparo, and P. Thomas, “Finite-state channel models for signal transduction in neural systems,” in Proc. IEEE International Conference on Acoustics, Speech, and Signal Processing (ICASSP), Shanghai, China, 2016. (Invited paper.) {{Open|http://arxiv.org/abs/1609.05517|arXiv|*}} {{Closed|http://ieeexplore.ieee.org/document/7472889/|IEEEXplore}}
+
* B. Koo, C. Lee, H. B. Yilmaz, N. Farsad, A. W. Eckford, and C.-B. Chae, “Molecular MIMO: From theory to prototype,” ''IEEE Journal on Selected Areas in Communications'', vol. 34, no. 3, Mar. 2016. <br />{{Open|http://ieeexplore.ieee.org/document/7397863/|IEEEXplore open access|}} {{HighlyCited}} {{Media|http://spectrum.ieee.org/tech-talk/telecom/wireless/for-best-results-send-molecular-messages-through-mimo|IEEE Spectrum}}
  
 
=== 2015 ===
 
=== 2015 ===
−
* T. Furubayashi, T. Nakano, A. W. Eckford, and T. Yomo, “Reliable End-to-end Molecular Communication with Packet Replication and Retransmission,” in Proc. IEEE Global Communications Conference (GLOBECOM), San Diego, CA, USA, 2015.
+
* S. A. Banani, A. W. Eckford, and R. S. Adve, “Analyzing the impact of access point density on the performance of finite-area networks,” ''IEEE Transactions on Communications'', vol. 63, no. 12, pp. 5143-5161, Dec. 2015. <br />{{Open|https://arxiv.org/abs/1512.03338|arXiv|*}} {{Closed|http://ieeexplore.ieee.org/document/7275153/|IEEEXplore}}
−
* N. Farsad, W. Guo, C.-B. Chae, and A. W. Eckford, “Stable distributions as noise models for molecular communication,” in Proc. IEEE Global Communications Conference (GLOBECOM), San Diego, CA, USA, 2015. {{Open|http://arxiv.org/abs/1512.01921|arXiv|*}}
+
* N. Farsad, A. W. Eckford, and S. Hiyama, “Design and optimizing of on-chip kinesin substrates for molecular communication,” ''IEEE Transactions on Nanotechnology'', vol. 14, no. 4, pp. 699-708, Jul. 2015. <br />{{Open|https://arxiv.org/abs/1505.02202|arXiv|*}} {{Closed|http://ieeexplore.ieee.org/document/7105933/|IEEEXplore}}
−
* S. A. Banani, A. W. Eckford, and R. S. Adve, “A perturbed hexagonal lattice to model basestation locations in real-world cellular networks,” in Proc. IEEE GC 2015 Workshop on 5G Heterogeneous and Small Cell Networks (HetSNets), San Diego, CA, USA, 2015.
+
* S. F. Bush, J. L. Paluh, G. Piro, V. Rao, V. Prasad, and A. W. Eckford, “Defining communication at the bottom,” ''IEEE Transactions on Molecular, Biological, and Multi-Scale Communications'', vol. 1, no. 1, pp. 90-96, Mar. 2015. <br />{{Open|https://www.researchgate.net/publication/282526380_Defining_Communication_at_the_Bottom|ResearchGate|*}} {{Closed|http://ieeexplore.ieee.org/document/7181713/|IEEEXplore|}} {{HighlyCited}}
−
* A. W. Eckford and P. Thomas, “Information theory of intercellular signal transduction,” in Proc. 49th Asilomar Conference on Signals, Systems and Computers, Pacific Grove, CA, USA, 2015. (Invited paper.)
 
−
* S. Qiu, N. Farsad, Y. Y. Dong, A. W. Eckford, and W. Guo, “Under-water molecular signaling: A hidden transmitter and absent receivers problem,” in Proc. IEEE International Conference on Communications (ICC), London, UK, 2015.
 
−
* B. Koo, H. B. Yilmaz, C.-B. Chae, and A. W. Eckford, “Detection algorithms for molecular MIMO,” in Proc. IEEE International Conference on Communications (ICC), London, UK, 2015. {{Open|http://arxiv.org/abs/1503.03600|arXiv|*}}
 
−
* N.-R. Kim, N. Farsad, C.-B. Chae, and A. W. Eckford, “A universal channel model for molecular communication systems with metal-oxide detectors,” in Proc. IEEE International Conference on Communications (ICC), London, UK, 2015. {{Open|http://arxiv.org/abs/1503.02809|arXiv|*}}
 
−
* L. Wang, N. Farsad, W. Guo, S. Magierowski, and A. W. Eckford, “Molecular barcodes: Information transmission via persistent chemical tags,” in Proc. IEEE International Conference on Communications (ICC), London, UK, 2015. {{Open|1=https://www.researchgate.net/profile/Nariman_Farsad/publication/270645305_Molecular_Barcodes_Information_Transmission_via_Persistent_Chemical_Tags/links/5501bab90cf24cee39f8c48f.pdf?origin=publication_detail|2=ResearchGate|3=*}}
 
−
* C. Lee, B. Koo, N.-R. Kim, B. Yilmaz, N. Farsad, A. W. Eckford, and C.-B. Chae, “Molecular MIMO communication link” (demonstration paper), in Proc. IEEE Intl. Conf. on Computer Communications (INFOCOM), Hong Kong, pp. 14-15, 2015. {{Open|http://arxiv.org/abs/1503.04921|arXiv|*}}
 
  
 
=== 2014 ===
 
=== 2014 ===
−
* S. A. Banani, A. W. Eckford, and R. S. Adve, “The penalty for random deployment in hexagonal lattice networks with perturbed interferers,” in Proc. IEEE 6th Int. Workshop on Heterogeneous and Small Cell Networks (HetSNets), Austin, TX, 2014.
+
* N. Farsad, N.-R. Kim, A. W. Eckford, and C.-B. Chae, “Channel and noise models for nonlinear molecular communication systems,” ''IEEE Journal on Selected Areas in Communications'', vol. 32, no. 12, pp. 2392-2401, Dec. 2014. <br />{{Open|http://arxiv.org/abs/1311.6208|arXiv|*}} {{Closed|http://ieeexplore.ieee.org/document/6949065/|IEEEXplore|}} {{HighlyCited}}  
−
* A. W. Eckford and C.-B. Chae, “Scaling laws for molecular communication,” in Proc. IEEE International Symposium on Information Theory (ISIT), Honolulu, HI, 5 pp., 2014. {{Open|http://arxiv.org/abs/1404.0346|arXiv|*}}
+
* N.-R. Kim, A. W. Eckford, and C.-B. Chae, “Symbol interval optimization for molecular communication with drift,” ''IEEE Transactions on Nanobioscience'', vol. 13, no. 3, pp. 223-229, Sep. 2014. <br />{{Open|http://arxiv.org/abs/1407.5776|arXiv|*}} {{Closed|http://ieeexplore.ieee.org/document/6881710/|IEEEXplore|}} {{HighlyCited}}
−
* N.-R. Kim, N. Farsad, C.-B. Chae, and A. W. Eckford, “A realistic channel model for molecular communication with imperfect receivers,” in Proc. IEEE international Conference on Communications (ICC), Sydney, Australia, pp. 3987-3992, 2014.
+
* N. Farsad, A. W. Eckford, and S. Hiyama, “A Markov chain channel model for active transport molecular communication,” ''IEEE Transactions on Signal Processing'', vol. 62, no. 9, pp. 2424-2436, May 2014. <br />{{Closed|http://ieeexplore.ieee.org/document/6766704/|IEEEXplore}}
−
* N. Farsad, W. Guo, and A. W. Eckford, “Molecular communications link” (demonstration paper), in Proc. IEEE Intl. Conf. on Computer Communications (INFOCOM), Toronto, ON, pp. 107-108, 2014.
 
−
* S. A. Banani, A. W. Eckford, and R. S. Adve, “Required number of small cells in heterogeneous networks with non-uniform traffic distribution,” in Proc. Conference on Information Sciences and Systems, Princeton, NJ, 6 pp., 2014.
 
  
 
=== 2013 ===
 
=== 2013 ===
−
* A. W. Eckford and P. J. Thomas, “Capacity of a simple intercellular signal transduction channel,” in Proc. IEEE International Symposium on Information Theory (ISIT), Istanbul, Turkey, 5 pp., 2013. {{Open|http://arxiv.org/abs/1305.2245|arXiv|*}}
+
* N. Farsad, W. Guo, and A. W. Eckford, “Table-top molecular communication: Text messages through chemical signals,” ''PLOS ONE'', vol. 8, no. 12, 13 pp., Dec. 2013. <br />{{Open|1=http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0082935|2=PLOS One|3=}} {{HighlyCited}} {{Media|https://www.economist.com/technology-quarterly/2014/03/08/its-the-alcohol-talking|The Economist}} {{Media|https://www.wsj.com/articles/message-in-a-boozy-bottle-1388799352|The Wall Street Journal}} {{Media|http://news.nationalpost.com/news/how-canadian-scientists-used-a-mist-of-alcohol-to-develop-a-new-pheromone-inspired-way-to-send-text-messages|National Post}} {{Media|1=http://www.ctvnews.ca/video?clipId=263007|2=CTV News}}
−
* X. Yan, W. Gage, and A. W. Eckford, “Integrating prior knowledge in time series alignment: Prior optimized time warping,” in Proc. 13th Canadian Workshop on Information Theory, Toronto, ON, 4 pp., 2013.
+
* W. Guo, S. Wang, A. W. Eckford, and J. Wu, “Reliable communication envelopes of molecular diffusion channels,” ''Electronics Letters'', vol. 49, no. 19, pp. 1248—1249, 12 Sep. 2013. <br />{{Closed|http://ieeexplore.ieee.org/document/6612809/|IEEEXplore|}} {{Media|https://www.theiet.org/resources/journals/eletters/4919/data-in-the-wind.cfm|Electronics Letters featured article}}
  
 
=== 2012 ===
 
=== 2012 ===
−
* K. V. Srinivas, A. W. Eckford, and R. S. Adve, “Fractional cooperation in femtocell networks,” in Proc. IEEE Global Communications Conference (Globecom), Anaheim, CA, 6 pp., 2012.
+
* N. Farsad, A. W. Eckford, S. Hiyama, and Y. Moritani, “On-chip molecular communication: Analysis and design,” ''IEEE Transactions on Nanobioscience'', vol. 11, no. 3, pp. 304—314, Sep. 2012. <br />{{Closed|http://ieeexplore.ieee.org/document/6145759/|IEEEXplore|}} {{HighlyCited}}
−
* N. Farsad, A. W. Eckford, and S. Hiyama, “Modeling and design of polygon-shaped Kinesin substrates for molecular communication,” in Proc. IEEE International Conference on Nanotechnology, Birmingham, UK, 5 pp., 2012.
+
* K. V. Srinivas, A. W. Eckford, and R. S. Adve, “Molecular communication in fluid media: The additive inverse Gaussian noise channel,” ''IEEE Transactions on Information Theory'', vol. 58, no. 7, pp. 4678—4692, Jul. 2012. <Br />{{Open|https://arxiv.org/abs/1012.0081|arXiv|*}} {{Closed|http://ieeexplore.ieee.org/document/6191345/|IEEEXplore|}} {{HighlyCited}}
−
* A. W. Eckford, K. V. Srinivas, and R. S. Adve, “The peak constrained additive inverse Gaussian noise channel,” in Proc. IEEE International Symposium on Information Theory (ISIT), Boston, MA, 5 pp., 2012.
+
* S. Kadloor, R. S. Adve, and A. W. Eckford, “Molecular communication using Brownian motion with drift,” ''IEEE Transactions on Nanobioscience'', vol. 11, no. 2, pp. 89—99, Jun. 2012. <br />{{Open|https://arxiv.org/abs/1006.3959|arXiv|*}} {{Closed|http://ieeexplore.ieee.org/document/6168841/|IEEEXplore|}} {{HighlyCited}}
−
* N. Farsad, A. W. Eckford, and S. Hiyama, “A mathematical channel optimization formula for active transport molecular communication,” in Proc. 2nd IEEE International Workshop on Molecular and Nanoscale Communications, Ottawa, ON, 5 pp., 2012.
+
* N. Farsad and A. W. Eckford, “Resource allocation via linear programming for fractional cooperation,” ''IEEE Transactions on Wireless Communications'', vol. 11, no. 5, pp. 1633—1637, May 2012. <br />{{Closed|http://ieeexplore.ieee.org/document/6170859/|IEEEXplore|}}
  
 
=== 2011 ===
 
=== 2011 ===
−
* N. Farsad, A. W. Eckford, and S. Hiyama, “Channel design and optimization of active transport molecular communication,” in Proc. International Conference on Bio-Inspired Models of Network, Information, and Computing Systems, York, UK, 12 pp., 2011.
+
* N. Farsad, A. W. Eckford, S. Hiyama, and Y. Moritani, “Quick system design of vesicle-based active transport molecular communication by using a simple transport model,” ''Nano Communication Networks'', vol. 2, no. 4, pp. 175—188, 2011. <br />{{Closed|http://www.sciencedirect.com/science/article/pii/S1878778911000391|ScienceDirect|}}
−
* A. Calce, N. Farsad, and A. W. Eckford, “An experimental study of fractional cooperation in wireless mesh networks,” in Proc. 22nd IEEE International Symposium on Personal, Indoor, and Mobile Radio Communications (PIMRC), Toronto, ON, 5 pp., 2011.
 
−
* L. Cui and A. W. Eckford, “The delay selector channel: Definition and capacity bounds,” in Proc. 12th Canadian Workshop on Information Theory, Kelowna, BC, 4 pp., 2011.
 
−
* J. P. K. Chu, A. W. Eckford, and R. S. Adve, “Distributed optimization of the Bhattacharyya parameter in wireless relay networks,” in Proc. 12th Canadian Workshop on Information Theory, Kelowna, BC, 6 pp., 2011.
 
−
* N. Farsad, A. W. Eckford, S. Hiyama, and Y. Moritani, “A simple mathematical model for information rate of active transport molecular communication,” in Proc. IEEE International Workshop on Molecular and Nano-scale Communications, Shanghai, China, 6 pp., 2011.
 
−
* K. V. Srinivas, R. S. Adve, A. W. Eckford, and Y. Lostanlen, “Towards fractional cooperation in femtocells,” in  Proc. CWiND 3rd International Workshop on Femtocells, Luton, UK, 3 pp., 2011.
 
  
 
''For publications prior to 2011, see: [[Older Publications]]''
 
''For publications prior to 2011, see: [[Older Publications]]''
  
−
== Other ==
+
''[[Conference and other publications]] are now listed on a separate page.''
−
 
 
−
=== 2016 ===
 
−
* A. W. Eckford and P. J. Thomas, "Entropy of the sum of two independent, non-identically-distributed exponential random variables," arXiv:1609.02911. {{Open|https://arxiv.org/abs/1609.02911|arXiv}}
 

Latest revision as of 06:48, 14 August 2024

A list of recent books and journal papers by lab members. Conference and other publications are listed on a separate page.

Links to papers are either open access or require subscription . A single asterisk (*) indicates that the version is not authoritative (e.g., preprint version).

Publications with (Highly Cited) have been cited at least 50 times (counts from Google Scholar).

Some publications have links to media coverage and other supplemental information.

In compliance with the Tri-Agency Open Access Policy, all journal publications since May 1, 2015 either have an open-access version, or were not supported by tri-agency funds (designated by **).

For publications prior to 2011, see: Older Publications

Books

  • T. Nakano, A. W. Eckford, and T. Haraguchi, Molecular Communication, Cambridge: Cambridge University Press, 2013.
    Google Books(partial preview) (Highly Cited)

Journal Papers

Preprints

  • H. Elayan, S. Elmaadawy, A. W. Eckford, R. S. Adve, and J. Jornet, "A thermal study of terahertz induced protein interactions," to appear in IEEE Transactions on Nanobioscience.
    arXiv* IEEEXplore early access

2024

  • Y. Qiu, Y. M. Kang, C. Korfmann, F. Pouyet, A. W. Eckford, and A. F. Palazzo, "The GC-content at the 5’ends of human protein-coding genes is undergoing mutational decay," Genome Biology, vol. 25, no. 219, 2024.
    bioRxiv* Springer open access
  • D. Jing, L. Lin, and A. W. Eckford, "Performance analysis and ISI mitigation with imperfect transmitter in molecular communication," IEEE Transactions on Nanobioscience, vol. 23, no. 3, pp. 428-438, Jul. 2024.
    arXiv* IEEEXplore
  • F. Gulec, D. Y. Koda, B. Atakan, and A. W. Eckford, "Localization of a passive source with a sensor network based experimental molecular communication platform," IEEE Transactions on Molecular, Biological, and Multi-Scale Communications, vol. 10, no. 2, pp. 223-235, Jun. 2024.
    arXiv* IEEEXplore
  • D. Jing, L. Lin, and A. W. Eckford, "Energy allocation for multi-user cooperative molecular communication systems in the internet of bio-nano things," IEEE Internet of Things Journal, vol. 11, no. 9, pp. 16303-16313, May 2024.
    arXiv* IEEEXplore
  • Y. Parhizkar, G. Cheung, and A. W. Eckford, "Signal processing in the retina: Interpretable graph classifier to predict ganglion cell responses," IEEE Open Journal of Signal Processing, vol. 5, pp. 303-311, 2024.
    IEEEXplore open access

2023

  • H. Elayan, A. W. Eckford, and R. S. Adve, "Terahertz induced protein interactions in a random medium," IEEE Transactions on Molecular, Biological, and Multi-Scale Communications, vol. 9, no. 4, pp. 435-446, Dec. 2023.
    arXiv* IEEEXplore
  • T. Sajjad and A. W. Eckford, "High-speed molecular communication in vacuum," IEEE Transactions on Molecular, Biological, and Multi-Scale Communications, vol. 9, no. 4, pp. 382-390, Dec. 2023.
    arXiv* IEEEXplore
  • F. Gulec and A. W. Eckford, "A stochastic biofilm disruption model based on quorum sensing mimickers," IEEE Transactions on Molecular, Biological, and Multi-Scale Communications, vol. 9, no. 3, pp. 346-350, Sep. 2023.
    arXiv* IEEEXplore
  • X. Chen, F. Ji, M. Wen, Y. Huang, and A. W. Eckford, "Mutual information rate of Gaussian and truncated Gaussian inputs on intensity-driven signal transduction channels," IEEE Communications Letters, vol. 27, no. 8, pp. 1989-1993, Aug. 2023.
    arXiv* IEEEXplore
  • D. Jing and A. W. Eckford, "Lightweight channel codes for ISI mitigation in molecular communication between bionanosensors," IEEE Sensors Journal, vol. 23, no. 13, pp. 13859-13867, Jul. 2023.
    arXiv* IEEEXplore
  • F. Gulec, F. Dressler, and A. W. Eckford, "A computational approach for the characterization of airborne pathogen transmission in turbulent molecular communication channels," IEEE Transactions on Molecular, Biological, and Multi-Scale Communications, vol. 9, no. 2, pp.124-134, Jun. 2023.
    arXiv* IEEEXplore
  • W. D. Hunt, N. A. McCarty, E. M. Marin, R. S. Westafer, P. R. Yamin, G. Cui, A. W. Eckford, and D. R. Denison, "A transistor model for the cystic fibrosis transmembrane conductance regulator," Biophysical Reports, vol. 3, no. 2, 100108, Jun. 2023.
    ScienceDirect open access
  • H. Elayan, A. W. Eckford, and R. S. Adve, "Selectivity of protein interactions stimulated by terahertz signals," IEEE Transactions on Nanobioscience, vol. 22, no. 2, pp. 318-328, Apr. 2023.
    arXiv* IEEEXplore
  • Y. Fang, S. T. Johnston, M. Faria, X. Huang, A. W. Eckford, and J. Evans, “Molecular communication for quorum sensing inspired cooperative drug delivery,” IEEE Transactions on Molecular, Biological, and Multi-Scale Communications, vol. 9, no. 1, pp. 100-105, Mar. 2023.
    arXiv* IEEEXplore

2022

  • D. Chen, A. G. Strang, A. W. Eckford, and P. J. Thomas, "Explicitly solvable continuous-time inference for partially observed Markov processes," IEEE Transactions on Signal Processing, vol. 70, pp. 6232-6242, 2022.
    arXiv* IEEEXplore
  • A. S. Moffett, G. Cui, P. J. Thomas, W. D. Hunt, N. A. McCarty, R. S. Westafer, and A. W. Eckford, "Permissive and nonpermissive channel closings in CFTR revealed by a factor graph inference algorithm," Biophysical Reports, vol. 2, no. 4, 100083, Dec. 2022.
    ScienceDirect open access
  • X. Chen, M. Wen, F. Ji, Y. Huang, Y. Tang, and A. W. Eckford, “Detection interval of aerosol propagation from the perspective of molecular communication: How long is enough?” IEEE Journal on Selected Areas in Communications, vol. 40, no. 22, pp. 3255-3270, Nov. 2022.
    arXiv* IEEEXplore
  • X. Chen, F. Ji, M. Wen, Y. Huang, Y. Tang, and A. W. Eckford, "Low complexity first: Duration-centric ISI mitigation in molecular communication via diffusion," IEEE Communications Letters, vol. 26, no. 11, pp. 2665-2669, Nov. 2022.
    arXiv* IEEEXplore
  • A. S. Moffett, P. J. Thomas, M. Hinczewski, and A. W. Eckford, "Cheater suppression and stochastic clearance through quorum sensing," PLOS Computational Biology, vol. 18, no. 7, e1010292, Jul. 2022.
    PLOS Computational Biology Phys.org IFLScience ScienceAlert
  • D. Jing, Y. Li, and A. W. Eckford, "An extended Kalman filter for distance estimation and power control in mobile molecular communication," IEEE Transactions on Communications, vol. 70, no. 7, pp. 4373-4385, Jul. 2022.
    arXiv* IEEEXplore
  • A. S. Moffett and A. W. Eckford, "Minimal informational requirements for fitness," Physical Review E, vol. 105, no. 1, 014403, Jan. 2022.
    arXiv* Physical Review Journals

2021

  • X. Qian, M. Di Renzo, and A. W. Eckford, "K-Means Clustering-Aided Non-Coherent Detection for Molecular Communications," IEEE Transactions on Communications, vol. 69, no. 8, pp. 5456-5470, Aug. 2021.
    arXiv* IEEEXplore
  • H. Awan, R. S. Adve, N. Wallbridge, C. Plummer, and A. W. Eckford, "Modelling the Role of Inter-cellular Communication in Modulating Photosynthesis in Plants," IEEE Transactions on Molecular, Biological, and Multi-Scale Communication, vol. 7, no. 2, pp. 94-99, Jun. 2021.
    arXiv* IEEEXplore
  • Y. Fang, A. Noel. A. W. Eckford, N. Yang, and J. Guo, "Characterization of cooperators in quorum sensing with 2D molecular signal analysis," IEEE Transactions on Communications, vol. 69, no. 2, pp. 799-816, Feb. 2021.
    arXiv* IEEEXplore
  • D. Jing, Y. Li, and A. W. Eckford, "Power control for ISI mitigation in mobile molecular communication," IEEE Communications Letters, vol. 25, no. 2, pp. 460-464, Feb. 2021.
    arXiv* IEEEXplore
  • H. Elayan, A. W. Eckford, and R. Adve, "Information rates of controlled protein interactions using terahertz communication," IEEE Transactions on Nanobioscience, vol. 20, no. 1, pp. 9-19, Jan. 2021.
    arXiv* IEEEXplore

2020

  • A. S. Moffett, N. Wallbridge, C. Plummer, and A. W. Eckford, "The fitness value of information with delayed phenotype switching: Optimal performance with imperfect sensing," Physical Review E, vol. 102, no. 5, 052403, Nov. 2020.
    arXiv* Physical Review Journals
  • H. Awan, K. Zeid, R. S. Adve, N. Wallbridge, C. Plummer, and A. W. Eckford, "Communication in plants: Comparison of multiple action potential and mechanosensitive signals with experiments," IEEE Transactions on Nanobioscience, vol. 19, no. 2, pp. 213-223, Apr. 2020.
    arXiv* IEEEXplore TNB Featured Article
  • P. Hou, A. W. Eckford and L. Zhao, "Analysis and design of two-hop diffusion-based molecular communication with ligand receptors," IEEE Access, vol. 8, pp. 189458-189470, 2020.
    IEEEXplore open access

2019

  • A. Noel, S. Monabbati, D. Makrakis, and A. W. Eckford, "Modeling interference-free neuron spikes with optogenetic stimulation," IEEE Transactions on Molecular, Biological, and Multi-Scale Communications, vol. 5, no. 2, pp. 100-111, Nov. 2019.
    arXiv* IEEEXplore
  • Y. Fang, A. Noel, N. Yang, A. W. Eckford, and R. A. Kennedy, "Symbol-by-symbol maximum likelihood detection for cooperative molecular communication," IEEE Transactions on Communications, vol. 67, no. 7, pp. 4885-4899, Jul. 2019.
    arXiv* IEEEXplore
  • M. Mohseni, S. A. Banani, A. W. Eckford, and R. S. Adve, "Scheduling for VoLTE: Resource allocation optimization and low-complexity algorithms," IEEE Transactions on Wireless Communications, vol. 18, no. 3, pp. 1534-1547, Mar. 2019.
    arXiv* IEEEXplore
  • H. Awan, R. S. Adve, N. Wallbridge, C. Plummer, and A. W. Eckford, "Communication and information theory of single action potential signals in plants," IEEE Transactions on Nanobioscience, vol. 18, no. 1, pp. 61-73, Jan. 2019.
    arXiv* IEEEXplore
  • H. Awan, R. S. Adve, N. Wallbridge, C. Plummer and A. W. Eckford, "Information Theoretic Based Comparative Analysis of Different Communication Signals in Plants," IEEE Access, vol. 7, pp. 117075-117087, 2019.
    IEEEXplore open access
  • N. Kim, N. Farsad, C. Lee, A. W. Eckford and C. Chae, "An experimentally validated channel model for molecular communication systems," IEEE Access, vol. 7, pp. 81849-81858, 2019.
    IEEEXplore open access
  • X. Qian, M. Di Renzo and A. W. Eckford, "Molecular Communications: Model-Based and Data-Driven Receiver Design and Optimization," IEEE Access, vol. 7, pp. 53555-53565, 2019.
    IEEEXplore open access

2018

  • A. Noel, D. Makrakis, and A. W. Eckford, "Distortion distribution of neural spike train sequence matching with optogenetics," IEEE Transactions on Biomedical Engineering, vol. 65, no. 12, pp. 2814-2826, Dec. 2018.
    arXiv* IEEEXplore TBME featured article
  • T. Furubayashi, Y. Sakatani, T. Nakano, A. W. Eckford, and N. Ichihashi, "Design and wet-laboratory implementation of reliable end-to-end molecular communication," Wireless Networks, vol. 24, no. 5, pp. 1809-1819, Jul. 2018.**
    SpringerLink
  • N. Farsad, Y. Murin, A. W. Eckford, and A. Goldsmith, "Capacity limits of diffusion-based molecular timing channels with finite particle lifetime," IEEE Transactions on Molecular, Biological, and Multi-Scale Communications, vol. 4, no. 2, Jun. 2018.
    arXiv* IEEEXplore
  • A. W. Eckford and P. J. Thomas, "The channel capacity of channelrhodopsin and other intensity-driven signal transduction receptors," IEEE Transactions on Molecular, Biological, and Multi-Scale Communications, vol. 4, no. 1, Mar. 2018.
    arXiv* IEEEXplore
  • W. Guo, Y. Deng, H. B. Yilmaz, N. Farsad, M. Elkashlan, C.-B. Chae, A. W. Eckford, and A. Nallanathan, "SMIET: Simultaneous molecular information and energy transfer," IEEE Wireless Communications, vol. 25, no. 1, pp. 106-113, Feb. 2018.
    arXiv* IEEEXplore

2017

  • N. Farsad, Y. Murin, W. Guo, C.-B. Chae, A. W. Eckford, and A. Goldsmith, "Communication system design and analysis for asynchronous molecular timing channels," IEEE Transactions on Molecular, Biological, and Multi-Scale Communications, vol. 3, no. 4, pp. 239-253, Dec. 2017.
    arXiv* IEEEXplore
  • Y. Fang, A. Noel, N. Yang, A. W. Eckford, and R. A. Kennedy, "Convex optimization of distributed cooperative detection in multi-receiver molecular communication," IEEE Transactions on Molecular, Biological, and Multi-Scale Communications, vol. 3, no. 3, pp. 166-182, Sep. 2017.
    arXiv* IEEEXplore

2016

  • P. J. Thomas and A. W. Eckford, "Capacity of a Simple Intercellular Signal Transduction Channel," IEEE Transactions on Information Theory, vol. 62, no. 12, pp. 7358-7382, Dec. 2016.
    arXiv* IEEEXplore (Highly Cited)
  • S. A. Banani, A. W. Eckford, and R. S. Adve, “Analyzing dependent placements of small cells in a two-layer heterogeneous network with a rate coverage constraint,” IEEE Transactions on Vehicular Technology, vol. 65, no. 12, pp. 9801-9816, Dec. 2016.
    arXiv* IEEEXplore
  • N. Farsad, H. B. Yilmaz, A. W. Eckford, C.-B. Chae, and W. Guo, “A comprehensive survey of recent advancements in molecular communication,” IEEE Communications Surveys and Tutorials, vol. 18, no. 3, pp. 1887-1919, third quarter 2016.
    IEEEXplore open access (Highly Cited)
  • W. Guo, T. Asyhari, N. Farsad, H. B. Yilmaz, B. Li, A. W. Eckford, C.-B. Chae, “Molecular communications: Channel model and physical layer techniques,” IEEE Wireless Communications, vol. 23, no. 4, pp. 120-127, Aug. 2016.
    arXiv* IEEEXplore (Highly Cited)
  • T. Furubayashi, T. Nakano, A. W. Eckford, Y. Okaie, and T. Yomo, “Packet fragmentation and reassembly in molecular communication,” IEEE Transactions on Nanobioscience, vol. 15, no. 3, pp. 284-288, Apr. 2016.**
    IEEEXplore
  • B. Koo, C. Lee, H. B. Yilmaz, N. Farsad, A. W. Eckford, and C.-B. Chae, “Molecular MIMO: From theory to prototype,” IEEE Journal on Selected Areas in Communications, vol. 34, no. 3, Mar. 2016.
    IEEEXplore open access (Highly Cited) IEEE Spectrum

2015

  • S. A. Banani, A. W. Eckford, and R. S. Adve, “Analyzing the impact of access point density on the performance of finite-area networks,” IEEE Transactions on Communications, vol. 63, no. 12, pp. 5143-5161, Dec. 2015.
    arXiv* IEEEXplore
  • N. Farsad, A. W. Eckford, and S. Hiyama, “Design and optimizing of on-chip kinesin substrates for molecular communication,” IEEE Transactions on Nanotechnology, vol. 14, no. 4, pp. 699-708, Jul. 2015.
    arXiv* IEEEXplore
  • S. F. Bush, J. L. Paluh, G. Piro, V. Rao, V. Prasad, and A. W. Eckford, “Defining communication at the bottom,” IEEE Transactions on Molecular, Biological, and Multi-Scale Communications, vol. 1, no. 1, pp. 90-96, Mar. 2015.
    ResearchGate* IEEEXplore (Highly Cited)

2014

  • N. Farsad, N.-R. Kim, A. W. Eckford, and C.-B. Chae, “Channel and noise models for nonlinear molecular communication systems,” IEEE Journal on Selected Areas in Communications, vol. 32, no. 12, pp. 2392-2401, Dec. 2014.
    arXiv* IEEEXplore (Highly Cited)
  • N.-R. Kim, A. W. Eckford, and C.-B. Chae, “Symbol interval optimization for molecular communication with drift,” IEEE Transactions on Nanobioscience, vol. 13, no. 3, pp. 223-229, Sep. 2014.
    arXiv* IEEEXplore (Highly Cited)
  • N. Farsad, A. W. Eckford, and S. Hiyama, “A Markov chain channel model for active transport molecular communication,” IEEE Transactions on Signal Processing, vol. 62, no. 9, pp. 2424-2436, May 2014.
    IEEEXplore

2013

2012

  • N. Farsad, A. W. Eckford, S. Hiyama, and Y. Moritani, “On-chip molecular communication: Analysis and design,” IEEE Transactions on Nanobioscience, vol. 11, no. 3, pp. 304—314, Sep. 2012.
    IEEEXplore (Highly Cited)
  • K. V. Srinivas, A. W. Eckford, and R. S. Adve, “Molecular communication in fluid media: The additive inverse Gaussian noise channel,” IEEE Transactions on Information Theory, vol. 58, no. 7, pp. 4678—4692, Jul. 2012.
    arXiv* IEEEXplore (Highly Cited)
  • S. Kadloor, R. S. Adve, and A. W. Eckford, “Molecular communication using Brownian motion with drift,” IEEE Transactions on Nanobioscience, vol. 11, no. 2, pp. 89—99, Jun. 2012.
    arXiv* IEEEXplore (Highly Cited)
  • N. Farsad and A. W. Eckford, “Resource allocation via linear programming for fractional cooperation,” IEEE Transactions on Wireless Communications, vol. 11, no. 5, pp. 1633—1637, May 2012.
    IEEEXplore

2011

  • N. Farsad, A. W. Eckford, S. Hiyama, and Y. Moritani, “Quick system design of vesicle-based active transport molecular communication by using a simple transport model,” Nano Communication Networks, vol. 2, no. 4, pp. 175—188, 2011.
    ScienceDirect

For publications prior to 2011, see: Older Publications

Conference and other publications are now listed on a separate page.

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